Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 4
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH19920 | Soybean | plastid | 92.87 | 93.03 |
KRG96007 | Soybean | nucleus | 63.65 | 66.06 |
KRH67719 | Soybean | nucleus | 63.48 | 65.88 |
CDY66142 | Canola | nucleus | 36.52 | 62.13 |
GSMUA_Achr4P30300_001 | Banana | nucleus | 20.7 | 59.2 |
VIT_08s0040g01560.t01 | Wine grape | plastid | 57.74 | 59.18 |
AT2G36990.1 | Thale cress | plastid | 51.83 | 54.48 |
Bra017213.1-P | Field mustard | plastid | 49.91 | 53.85 |
Solyc09g008040.2.1 | Tomato | nucleus, plastid | 52.0 | 53.11 |
CDX79708 | Canola | endoplasmic reticulum, extracellular | 13.74 | 53.02 |
CDY18468 | Canola | plastid | 49.91 | 52.76 |
PGSC0003DMT400055506 | Potato | nucleus, plastid | 51.65 | 51.03 |
GSMUA_Achr11P... | Banana | nucleus | 44.87 | 44.56 |
Os08t0242800-01 | Rice | plastid | 37.04 | 37.24 |
TraesCS5B01G563800.2 | Wheat | plastid | 36.35 | 37.12 |
HORVU5Hr1G125110.10 | Barley | plastid | 35.48 | 36.89 |
TraesCS5D01G551200.1 | Wheat | plastid | 35.83 | 36.85 |
KXG37075 | Sorghum | plastid | 35.48 | 36.76 |
TraesCS4A01G315700.3 | Wheat | plastid | 35.83 | 36.4 |
Zm00001d012810_P003 | Maize | plastid | 24.87 | 33.41 |
KRH51354 | Soybean | nucleus | 26.78 | 30.8 |
KRH60664 | Soybean | nucleus | 28.17 | 28.72 |
KRH39837 | Soybean | plastid | 20.0 | 22.86 |
KRH23963 | Soybean | plastid | 20.0 | 22.86 |
KRH04862 | Soybean | mitochondrion | 21.74 | 22.69 |
KRH53442 | Soybean | plastid | 18.96 | 21.5 |
KRH64502 | Soybean | plastid | 18.78 | 20.81 |
KRH18145 | Soybean | mitochondrion, nucleus | 17.57 | 19.73 |
KRH16520 | Soybean | mitochondrion, nucleus | 17.39 | 19.53 |
KRH16276 | Soybean | golgi, mitochondrion, nucleus, plastid | 12.87 | 17.92 |
Protein Annotations
Gene3D:1.10.10.10 | Gene3D:1.10.601.10 | EntrezGene:100778636 | MapMan:15.6.2.1 | EMBL:ACUP02006126 | ncoils:Coil |
EnsemblPlantsGene:GLYMA_10G057300 | GO:GO:0001053 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 |
GO:GO:0006351 | GO:GO:0006352 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016987 | GO:GO:2000142 |
UniProt:I1L8Z5 | InterPro:IPR036388 | EnsemblPlants:KRH32532 | ProteinID:KRH32532 | ProteinID:KRH32532.1 | PFAM:PF04539 |
PFAM:PF04542 | PFAM:PF04545 | PIRSF:PIRSF000767 | PRINTS:PR00046 | ScanProsite:PS00715 | ScanProsite:PS00716 |
PANTHER:PTHR30603 | PANTHER:PTHR30603:SF9 | InterPro:RNA_pol_sigma-70_dom | InterPro:RNA_pol_sigma70 | InterPro:RNA_pol_sigma70_r2 | InterPro:RNA_pol_sigma70_r3 |
InterPro:RNA_pol_sigma70_r4 | InterPro:RNA_pol_sigma_SigB/C/D/F | InterPro:RNA_pol_sigma_r2 | InterPro:RNA_pol_sigma_r3/r4-like | SUPFAM:SSF88659 | SUPFAM:SSF88946 |
TIGRFAMs:TIGR02937 | UniParc:UPI00023C90C2 | InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr10:-:5229747..5235214
Molecular Weight (calculated)
65592.7 Da
IEP (calculated)
9.672
GRAVY (calculated)
-0.518
Length
575 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFARTMFCS SPPFPPRTHH PWSTLPSSSS TSSVLMLHEQ ASPTVASWSS NFSAQNFPAS VLLPEQRDEY RPLLHMSKED KTSQAMLSTR QMDTVTVHEE
101: NNTENADQVV LDFRKHLHHW PNLQYLLTSS QIGEVAASST LEHVSVDLER RPNGVQFNGV SLAKKALSTS KQESSVVEDL KSIKADDDSI PFGLASTSLA
201: DPSIGRNKTV RSTRLLERRS KQRKVPKSKV IDDETYLARK DDAQEKLRAE KKKNEELDQD DPLRLFLWGP ETKQLLTLEQ ESQLISQIQD LLRLEEVKTN
301: LQSQFGREPT MAEWAEGAGL NCRLLQSQLH SGNRSREKLI QANLRMVVHV AKSYQGRGLS LQDLLQEGSM GLMKSVEKFN PLAGSRFGNY AFWWIRQAIR
401: KAVFRHSRTI RLPEKVFILL GKVMEAKKLY IQEGNLHPTK EELARRVGVT VEKIDKLLFS ARIPISMQQT VWADQNTTFQ EITADPTVEA TDVTVEKQLM
501: RRHVLNVLSV LHPKERRIIR LRYGFEDGEQ KSLSEIGDIF GLSKERVRQL EIRALYKLKK CLVKQGLDAY VDLLL
101: NNTENADQVV LDFRKHLHHW PNLQYLLTSS QIGEVAASST LEHVSVDLER RPNGVQFNGV SLAKKALSTS KQESSVVEDL KSIKADDDSI PFGLASTSLA
201: DPSIGRNKTV RSTRLLERRS KQRKVPKSKV IDDETYLARK DDAQEKLRAE KKKNEELDQD DPLRLFLWGP ETKQLLTLEQ ESQLISQIQD LLRLEEVKTN
301: LQSQFGREPT MAEWAEGAGL NCRLLQSQLH SGNRSREKLI QANLRMVVHV AKSYQGRGLS LQDLLQEGSM GLMKSVEKFN PLAGSRFGNY AFWWIRQAIR
401: KAVFRHSRTI RLPEKVFILL GKVMEAKKLY IQEGNLHPTK EELARRVGVT VEKIDKLLFS ARIPISMQQT VWADQNTTFQ EITADPTVEA TDVTVEKQLM
501: RRHVLNVLSV LHPKERRIIR LRYGFEDGEQ KSLSEIGDIF GLSKERVRQL EIRALYKLKK CLVKQGLDAY VDLLL
001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV
Arabidopsis Description
SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.