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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 6
  • plastid 4
  • mitochondrion 1
  • cytosol 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH19920 Soybean plastid 92.87 93.03
KRG96007 Soybean nucleus 63.65 66.06
KRH67719 Soybean nucleus 63.48 65.88
CDY66142 Canola nucleus 36.52 62.13
GSMUA_Achr4P30300_001 Banana nucleus 20.7 59.2
VIT_08s0040g01560.t01 Wine grape plastid 57.74 59.18
AT2G36990.1 Thale cress plastid 51.83 54.48
Bra017213.1-P Field mustard plastid 49.91 53.85
Solyc09g008040.2.1 Tomato nucleus, plastid 52.0 53.11
CDX79708 Canola endoplasmic reticulum, extracellular 13.74 53.02
CDY18468 Canola plastid 49.91 52.76
PGSC0003DMT400055506 Potato nucleus, plastid 51.65 51.03
GSMUA_Achr11P... Banana nucleus 44.87 44.56
Os08t0242800-01 Rice plastid 37.04 37.24
TraesCS5B01G563800.2 Wheat plastid 36.35 37.12
HORVU5Hr1G125110.10 Barley plastid 35.48 36.89
TraesCS5D01G551200.1 Wheat plastid 35.83 36.85
KXG37075 Sorghum plastid 35.48 36.76
TraesCS4A01G315700.3 Wheat plastid 35.83 36.4
Zm00001d012810_P003 Maize plastid 24.87 33.41
KRH51354 Soybean nucleus 26.78 30.8
KRH60664 Soybean nucleus 28.17 28.72
KRH39837 Soybean plastid 20.0 22.86
KRH23963 Soybean plastid 20.0 22.86
KRH04862 Soybean mitochondrion 21.74 22.69
KRH53442 Soybean plastid 18.96 21.5
KRH64502 Soybean plastid 18.78 20.81
KRH18145 Soybean mitochondrion, nucleus 17.57 19.73
KRH16520 Soybean mitochondrion, nucleus 17.39 19.53
KRH16276 Soybean golgi, mitochondrion, nucleus, plastid 12.87 17.92
Protein Annotations
Gene3D:1.10.10.10Gene3D:1.10.601.10EntrezGene:100778636MapMan:15.6.2.1EMBL:ACUP02006126ncoils:Coil
EnsemblPlantsGene:GLYMA_10G057300GO:GO:0001053GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006139
GO:GO:0006351GO:GO:0006352GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0016043GO:GO:0016987GO:GO:2000142
UniProt:I1L8Z5InterPro:IPR036388EnsemblPlants:KRH32532ProteinID:KRH32532ProteinID:KRH32532.1PFAM:PF04539
PFAM:PF04542PFAM:PF04545PIRSF:PIRSF000767PRINTS:PR00046ScanProsite:PS00715ScanProsite:PS00716
PANTHER:PTHR30603PANTHER:PTHR30603:SF9InterPro:RNA_pol_sigma-70_domInterPro:RNA_pol_sigma70InterPro:RNA_pol_sigma70_r2InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4InterPro:RNA_pol_sigma_SigB/C/D/FInterPro:RNA_pol_sigma_r2InterPro:RNA_pol_sigma_r3/r4-likeSUPFAM:SSF88659SUPFAM:SSF88946
TIGRFAMs:TIGR02937UniParc:UPI00023C90C2InterPro:WH-like_DNA-bd_sfSEG:seg::
Description
hypothetical protein
Coordinates
chr10:-:5229747..5235214
Molecular Weight (calculated)
65592.7 Da
IEP (calculated)
9.672
GRAVY (calculated)
-0.518
Length
575 amino acids
Sequence
(BLAST)
001: MEFARTMFCS SPPFPPRTHH PWSTLPSSSS TSSVLMLHEQ ASPTVASWSS NFSAQNFPAS VLLPEQRDEY RPLLHMSKED KTSQAMLSTR QMDTVTVHEE
101: NNTENADQVV LDFRKHLHHW PNLQYLLTSS QIGEVAASST LEHVSVDLER RPNGVQFNGV SLAKKALSTS KQESSVVEDL KSIKADDDSI PFGLASTSLA
201: DPSIGRNKTV RSTRLLERRS KQRKVPKSKV IDDETYLARK DDAQEKLRAE KKKNEELDQD DPLRLFLWGP ETKQLLTLEQ ESQLISQIQD LLRLEEVKTN
301: LQSQFGREPT MAEWAEGAGL NCRLLQSQLH SGNRSREKLI QANLRMVVHV AKSYQGRGLS LQDLLQEGSM GLMKSVEKFN PLAGSRFGNY AFWWIRQAIR
401: KAVFRHSRTI RLPEKVFILL GKVMEAKKLY IQEGNLHPTK EELARRVGVT VEKIDKLLFS ARIPISMQQT VWADQNTTFQ EITADPTVEA TDVTVEKQLM
501: RRHVLNVLSV LHPKERRIIR LRYGFEDGEQ KSLSEIGDIF GLSKERVRQL EIRALYKLKK CLVKQGLDAY VDLLL
Best Arabidopsis Sequence Match ( AT2G36990.1 )
(BLAST)
001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV
Arabidopsis Description
SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.