CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04862	Soybean	mitochondrion	78.21	58.62
VIT_04s0008g00600.t01	Wine grape	plastid	47.94	35.29
Solyc08g065970.2.1	Tomato	nucleus	41.65	31.22
PGSC0003DMT400065483	Potato	mitochondrion	41.89	31.17
Bra014857.1-P	Field mustard	nucleus, plastid	39.47	29.8
AT3G53920.1	Thale cress	plastid	41.16	29.77
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	36.8	26.67
Os05t0589200-01	Rice	plasma membrane	29.54	26.29
CDX76185	Canola	plastid	40.44	24.93
CDY13153	Canola	plastid	39.71	24.4
TraesCS1D01G440900.1	Wheat	plastid	30.27	21.63
TraesCS1B01G467100.1	Wheat	plastid	29.78	21.62
TraesCS1A01G431600.2	Wheat	plastid	29.78	21.58
Zm00001d039181_P001	Maize	nucleus	28.81	21.06
EES18778	Sorghum	plastid	27.84	19.49
KRH51354	Soybean	nucleus	22.76	18.8
KRH60664	Soybean	nucleus	23.24	17.02
KRH39837	Soybean	plastid	18.89	15.51
KRH23963	Soybean	plastid	18.89	15.51
KRH18145	Soybean	mitochondrion, nucleus	16.71	13.48
KRH16520	Soybean	mitochondrion, nucleus	16.71	13.48
KRH32532	Soybean	nucleus, plastid	17.92	12.87
KRH19920	Soybean	plastid	17.68	12.72
KRH64502	Soybean	plastid	15.98	12.72
KRH53442	Soybean	plastid	15.25	12.43
KRG96007	Soybean	nucleus	16.46	12.27
KRH67719	Soybean	nucleus	16.22	12.09
PGSC0003DMT400010456	Potato	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	EMBL:ACUP02008857	ncoils:Coil	EnsemblPlantsGene:GLYMA_14G145200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	UniProt:I1MA01	InterPro:IPR036388	EnsemblPlants:KRH16276
ProteinID:KRH16276	ProteinID:KRH16276.1	PFAM:PF04542	PANTHER:PTHR30603	PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma-70_dom
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937
UniParc:UPI00023D3495	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:30242653..30246489

Molecular Weight (calculated)

47129.9 Da

IEP (calculated)

10.238

GRAVY (calculated)

-0.279

Length

413 amino acids

Sequence
(BLAST)

001: MGVGFALNPR LRYCVLFFTN NIFLSLKKRM EELLNLQLES GKLVSTPRGY LCPQHFMRRE KSYKMLLSQE NKGKRSLSSV NKMIDNTQMH FGEVSTHFCL
101: LMDNLFVLEE TFADYEALRL EKAIILQLEK LGALKLFNVC LSRSLGTSPV SDYADKVNDY KDKVVVQSRK RKENKTRREN LLPRQFHPSF SASVVKRVPN
201: TKNKRIIVAK REAEISKGLK VLAELEKIRT AIEEDTKQVA SLSNGAEASG VDEKVLQQLL HHGYYCRDEL IQSTHSLVLY LARKYMGMGI ALDDLLQAGY
301: VGVLQGAGRF DSSRGYKFST YVQYWIRKSI LRVVARYARG IVIPPLNRAI NQIQKARKAM KCMHKKCPDD YEIAKMTGLS LDKIKSASNC LRIVASLDQK
401: VGNHLGVEYM VRL

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.