Factsheet for VIT_04s0008g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065483	Potato	mitochondrion	52.41	52.97
Solyc08g065970.2.1	Tomato	nucleus	51.52	52.45
KRH04862	Soybean	mitochondrion	50.98	51.91
PGSC0003DMT400010456	Potato	nucleus	6.06	49.28
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	35.29	47.94
Bra014857.1-P	Field mustard	nucleus, plastid	44.03	45.16
AT3G53920.1	Thale cress	plastid	45.1	44.31
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	42.42	41.75
CDX76185	Canola	plastid	44.74	37.46
CDY13153	Canola	plastid	44.38	37.05
TraesCS1D01G440900.1	Wheat	plastid	35.65	34.6
TraesCS1A01G431600.2	Wheat	plastid	34.58	34.04
Os05t0589200-01	Rice	plasma membrane	27.99	33.84
TraesCS1B01G467100.1	Wheat	plastid	33.87	33.39
Zm00001d039181_P001	Maize	nucleus	31.91	31.68
EES18778	Sorghum	plastid	32.62	31.02
VIT_13s0064g00190.t01	Wine grape	nucleus	16.76	29.47
VIT_15s0024g00640.t01	Wine grape	plastid	25.31	24.7
VIT_08s0040g01560.t01	Wine grape	plastid	21.75	21.75
VIT_16s0050g02520.t01	Wine grape	plastid	17.83	19.3
VIT_16s0039g00660.t01	Wine grape	plastid	18.0	17.47

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	EntrezGene:100252651	wikigene:100252651	MapMan:15.6.2.1	EMBL:AM459902
ProteinID:CAN83254	ProteinID:CAN83254.1	ProteinID:CBI20603	ProteinID:CBI20603.3	ncoils:Coil	UniProt:D7STK4
EMBL:FN595231	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0016987	GO:GO:0071482	GO:GO:2000142	GO:GO:2001141	InterPro:IPR036388
EntrezGene:LOC100252651	wikigene:LOC100252651	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046
PANTHER:PTHR30603	PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGR:TC52912
TIGR:TC65027	TIGRFAMs:TIGR02937	UniParc:UPI00015C8744	ArrayExpress:VIT_04s0008g00600	EnsemblPlantsGene:VIT_04s0008g00600	EnsemblPlants:VIT_04s0008g00600.t01
unigene:Vvi.3374	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002275831	RefSeq:XP_002275831.1	SEG:seg	:

Description

No Description!

Coordinates

chr4:-:531362..536648

Molecular Weight (calculated)

63424.2 Da

IEP (calculated)

9.762

GRAVY (calculated)

-0.448

Length

561 amino acids

Sequence
(BLAST)

001: MGMGFRLNLK WDFPISCPTL TNSPSRLCTS SVQGKEASFD STRFSFPSVT SEDCESLYKD PFKPFACSSG ALQTFENDYS AMEAMKMKIG KCSHGDLFKI
101: VNASQAPIGE DISASVAGLQ ASKASQFSLL LENLDILEEM FADSNMVRLE RDIMVQLGRL GALKLFQICL SRTLKTSTSF DLFSAPTEHI RECQTNGTVD
201: DHLDKVVVRS GKKEERKSKR ERALEKADNI YAFPLPSKTI RKGPGRPSVS TVKRTLNSRR KRLMNAKNEA EMSKGVKLVA NLERIRATLE EEIGHVASLS
301: NWAEAAGVDK KVLQQQLQFG WYCRDELLRS THSLVLYIAR NYRGMGVAFE DILQAGNLGV LQGAERFDHT KGYRFSTYVQ YWIRKSMSTL VARHARGVKI
401: PFTLNRAIGQ IQKARKALYK SHGRYPDDNE IAKFTGLSLA KIRSAGNCLR VVGSTDQSFQ DCWGATILEF TPDTSIKSPE EGFMQQCKRK DIHNLLKGLD
501: PRERQILVLR YGFGEQQRKS LEEIGRRFNV SKEWIRKLEK TALANLRDEE ICQNLRHYVD V

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.