Factsheet for PGSC0003DMT400010456

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065483	Potato	mitochondrion	100.0	12.43
Solyc08g065970.2.1	Tomato	nucleus	95.65	11.98
PGSC0003DMT400017455	Potato	nucleus	33.33	8.39
AT3G53920.1	Thale cress	plastid	50.72	6.13
VIT_04s0008g00600.t01	Wine grape	plastid	49.28	6.06
Bra014857.1-P	Field mustard	nucleus, plastid	46.38	5.85
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	47.83	5.79
KRH04862	Soybean	mitochondrion	42.03	5.26
Zm00001d039181_P001	Maize	nucleus	42.03	5.13
TraesCS1B01G467100.1	Wheat	plastid	42.03	5.1
TraesCS1A01G431600.2	Wheat	plastid	42.03	5.09
TraesCS1D01G440900.1	Wheat	plastid	42.03	5.02
PGSC0003DMT400055506	Potato	nucleus, plastid	42.03	4.98
PGSC0003DMT400079883	Potato	plastid	43.48	4.89
CDX76185	Canola	plastid	46.38	4.78
CDY13153	Canola	plastid	46.38	4.76
EES18778	Sorghum	plastid	40.58	4.75
PGSC0003DMT400023432	Potato	plastid	31.88	4.26
PGSC0003DMT400069555	Potato	nucleus	24.64	3.37
PGSC0003DMT400068109	Potato	nucleus	24.64	2.79
Os05t0589200-01	Rice	plasma membrane	0.0	0.0
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.6.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388
UniProt:M0ZY37	PFAM:PF04545	EnsemblPlantsGene:PGSC0003DMG400004084	PGSC:PGSC0003DMG400004084	EnsemblPlants:PGSC0003DMT400010456	PRINTS:PR00046
ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r3/r4-like
SUPFAM:SSF88659	UniParc:UPI0002952E07	InterPro:WH-like_DNA-bd_sf	:	:	:

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400004084]

Coordinates

chr6:-:50979972..50980378

Molecular Weight (calculated)

8477.2 Da

IEP (calculated)

9.803

GRAVY (calculated)

-0.716

Length

69 amino acids

Sequence
(BLAST)

1: MYSLLESLDP KEQQVIYFRF GLETHQRKSL EEIGRLYGVS KEWIRRIERR ALTKLRNADY FQHITHYSM

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.