CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039181_P001	Maize	nucleus	77.12	80.53
Os05t0589200-01	Rice	plasma membrane	53.39	67.89
TraesCS1A01G431600.2	Wheat	plastid	63.05	65.26
TraesCS1B01G467100.1	Wheat	plastid	62.71	65.03
TraesCS1D01G440900.1	Wheat	plastid	63.39	64.71
PGSC0003DMT400010456	Potato	nucleus	4.75	40.58
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	38.31	39.65
VIT_04s0008g00600.t01	Wine grape	plastid	31.02	32.62
Bra014857.1-P	Field mustard	nucleus, plastid	27.46	29.62
KRH04862	Soybean	mitochondrion	27.63	29.58
PGSC0003DMT400065483	Potato	mitochondrion	27.46	29.19
Solyc08g065970.2.1	Tomato	nucleus	27.12	29.04
AT3G53920.1	Thale cress	plastid	26.95	27.85
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	19.49	27.84
OQU83379	Sorghum	plastid	23.39	25.7
EER95113	Sorghum	plastid	22.03	24.62
CDX76185	Canola	plastid	27.46	24.18
CDY13153	Canola	plastid	27.29	23.96
KXG37075	Sorghum	plastid	20.68	21.98
EES18781	Sorghum	plastid	16.95	19.96
EES13412	Sorghum	plastid	16.78	19.8

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	UniProt:C5YWK9	EnsemblPlants:EES18778	ProteinID:EES18778
ProteinID:EES18778.2	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046
PANTHER:PTHR30603	PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	EnsemblPlantsGene:SORBI_3009G253000	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0003C6D6C9	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:58724108..58727042

Molecular Weight (calculated)

66145.1 Da

IEP (calculated)

8.831

GRAVY (calculated)

-0.499

Length

590 amino acids

Sequence
(BLAST)

001: MGLQMIHGRP CAYCCPSSSS SSSSSSSSSA WMMQALPPKQ SHHPLNGGKP IFSESLAALA AMHLLLKRRR DRSSRDIASS SGVLQITENK SAAANLTKHK
101: QVMSAERKLL DDALDRTSVQ YESWMDEETS FWMDRDNTNN NFQYGLLMQN LEELETSLAG KDLKILENDI LAHIQQLGAL RSFDASTAVG ATLLDTLTHD
201: QPDSSLLDQQ IIEFDPETTP LDEEEQEDSQ VVVVRSGKSE ERKLKRVRAS EKGSRISVKV NPRRPKKSSR KASSSQFISE WKSHPGRRRI IVREQSALLA
301: TIKECASLEK IREKMVKEGQ EVSYHRWAEA AGMDEAELMS RLQTGYCCRE RLLVTTEWLV RCIARSYTGM GTALDDLLQA GKMGVLDGAE KFDTRKGCRF
401: STYVKYWIRK GMLALLAENS GVTLLPARME SIMRKVKEAR RGIRYSEGRN PSDSEVAAAV GVSVANVRLA RKCSRRPVSL YSEIGIGQHA KFAEVIPDEA
501: AAAAEAPDEA ALFRGQLRER LLLVLGRLPA REGHVLRLRH GLEDGRCRSL EEIGGMYRVS KEWIRKIEKS AMARLRDDDD VRRDLHDFVC

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.