CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028585_P001	Maize	plastid	92.23	92.23
Os03t0271100-01	Rice	mitochondrion	75.76	74.07
HORVU4Hr1G060200.1	Barley	plastid	75.19	72.45
TraesCS4B01G209300.1	Wheat	plastid	75.0	72.39
TraesCS4D01G210000.1	Wheat	plastid	75.0	72.26
TraesCS4A01G095200.1	Wheat	plastid	75.0	72.26
OQU83379	Sorghum	plastid	60.61	59.59
KRH51354	Soybean	nucleus	41.48	43.8
GSMUA_Achr7P04860_001	Banana	nucleus	43.56	41.97
VIT_15s0024g00640.t01	Wine grape	plastid	45.45	41.74
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	42.99	41.42
KRH60664	Soybean	nucleus	43.56	40.78
Bra030732.1-P	Field mustard	plastid	43.94	40.7
CDX93555	Canola	plastid	43.94	40.49
CDY31138	Canola	plastid	43.94	40.49
CDX97496	Canola	plastid	43.75	40.46
Bra018617.1-P	Field mustard	plastid	43.75	40.31
CDX95052	Canola	plastid	43.56	39.45
AT1G08540.1	Thale cress	plastid	42.61	39.34
Solyc01g081490.2.1	Tomato	nucleus	44.32	38.17
PGSC0003DMT400079883	Potato	plastid	43.75	37.68
KXG37075	Sorghum	plastid	26.7	25.41
EES13412	Sorghum	plastid	21.02	22.2
EES18778	Sorghum	plastid	24.62	22.03
EES18781	Sorghum	plastid	19.51	20.56

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	EntrezGene:8081518	UniProt:C5WQ19	EnsemblPlants:EER95113
ProteinID:EER95113	ProteinID:EER95113.1	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987
GO:GO:2000142	InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767
PRINTS:PR00046	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like
EnsemblPlantsGene:SORBI_3001G423400	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0001A8313C	InterPro:WH-like_DNA-bd_sf
RefSeq:XP_002468115.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:70378503..70381544

Molecular Weight (calculated)

58777.3 Da

IEP (calculated)

9.482

GRAVY (calculated)

-0.469

Length

528 amino acids

Sequence
(BLAST)

001: MAFLAPPQFK WLPSARAAVF REPSGGAGSR PSRINCSFSS TAVADAELSV EPPPSPHRTL PGCFGEALLN KEAMVAAAAA EAVALARAAA EVAGEVARMA
101: QKDHPADLPR RDDTGDSFLS REVLRTEVGL LEARRAGLEL LEGEEFSSIF SDESEDDDDD DSGHSIAVAV KSARRTERKA RRVRAAMKAA KCFSSRNAVG
201: ASSTRKKRLK GCQTPLGCFY KMTGPRLLTA EQEVEFSEGI QDLLKLEAIQ KEVAQYNGGE PTFSQWAAAA GTDENTLRRR LNHGVYCKNR MVKSNVRLVI
301: SIAKEHEGPG MEFSDLIQEG MQGLIRGAEK FDASKGFRFS TYSHWWIKQA IRKSVLEQTQ IIRLPAHMAE ASSRVKECCR RLRRELKRLP SNEEIAVDTG
401: MTIRRVEAAM SLPKYSVSFT SKVGCTDVTY QEIMPDTSAE TAEEVLHRWL MKKDVNTALE SLSPREKLVM RYRFGIEGGR PRTLHDIGQI MGVSRERIRQ
501: IELGAFRKLR SKKRVQSLQH YLQPAESW

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.