Factsheet for Zm00001d028585_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

mitochondrion: 12121449
plastid: 12121449

plastid: 22065420

gfp PMID: 12121449

TA Beardslee, S Roy-Chowdhury, P Jaiswal, L Buhot, S Lerbs-Mache, DB Stern, LA Allison

Department of Biochemistry, University of Nebraska-Lincoln, N258 Beadle Center, Lincoln, NE 68588-0664, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95113	Sorghum	plastid	92.23	92.23
Os03t0271100-01	Rice	mitochondrion	74.62	72.96
TraesCS4B01G209300.1	Wheat	plastid	74.24	71.66
TraesCS4A01G095200.1	Wheat	plastid	74.05	71.35
TraesCS4D01G210000.1	Wheat	plastid	74.05	71.35
HORVU4Hr1G060200.1	Barley	plastid	73.48	70.8
Zm00001d049160_P002	Maize	plastid	59.28	56.6
KRH51354	Soybean	nucleus	40.72	43.0
VIT_15s0024g00640.t01	Wine grape	plastid	45.45	41.74
GSMUA_Achr7P04860_001	Banana	nucleus	42.61	41.06
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	42.23	40.69
Bra030732.1-P	Field mustard	plastid	43.56	40.35
CDY31138	Canola	plastid	43.37	39.97
CDX97496	Canola	plastid	43.18	39.93
KRH60664	Soybean	nucleus	42.61	39.89
CDX93555	Canola	plastid	43.18	39.79
Bra018617.1-P	Field mustard	plastid	42.99	39.62
AT1G08540.1	Thale cress	plastid	42.05	38.81
CDX95052	Canola	plastid	42.8	38.77
Solyc01g081490.2.1	Tomato	nucleus	42.8	36.87
PGSC0003DMT400079883	Potato	plastid	42.23	36.38
Zm00001d012810_P003	Maize	plastid	19.32	23.83
Zm00001d039181_P001	Maize	nucleus	23.67	22.12
Zm00001d024507_P001	Maize	plastid	18.75	22.0
Zm00001d049494_P001	Maize	plastid	20.83	21.83
Zm00001d039194_P001	Maize	plastid	19.13	20.32

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	EntrezGene:541717	UniProt:A0A096RK86	GO:GO:0001053
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388	ProteinID:ONL96503.1
PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046	ScanProsite:PS00716
PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946
TIGRFAMs:TIGR02937	UniParc:UPI000221A5ED	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d028585	EnsemblPlants:Zm00001d028585_P001	EnsemblPlants:Zm00001d028585_T001
SEG:seg	:	:	:	:	:

Description

Sigma70-like-transcription factor 3 sigma-like factor2B

Coordinates

chr1:+:40036028..40038476

Molecular Weight (calculated)

58464.0 Da

IEP (calculated)

9.511

GRAVY (calculated)

-0.432

Length

528 amino acids

Sequence
(BLAST)

001: MAFLAPPQFK WPLSTRAAAV FREPTGGAGS RPSRINCSFS STAVVDAECL SVGPPPSPHR TLPGCFGEAL LNKEAVVAAA AAEAVALARA AAEVAGEVAR
101: MAQNDHPAAL PPRDDTVDSF LSREVLRSEV GLDARRAGLV EMLEGEEHSS IFSDESEDDD DGGHSIAVTV KSARRSERRA RRVRAAMKTA KCSSSMKPVG
201: ASSTRRKRLK GCLTPLGCLY KMTGPRLLTA EQEVEFSEGI QDLLKLEAIQ KEVAQYNAGE PTFSQWAAAA GTDENTLRRR LNHGVYCKNR MVKSNVRLVI
301: SIAKEHEGPG MEFSDLIQDG MQGLIRGAEK FDASKGFRFS TYSHWWIKQA IRKSVLEQTQ IIRLPAHMAE ASSRVKECCR RLGRELKRLP SNEEIAVDTG
401: MTIRRVEAAM SLPKYSVSFT SKVGCTDVTY QEIMPDTSAE TAEETLHRWL MKKDVNTALD SLSPREKQVM RYRFGIEGGR ARTLHDIGQL MGVSRERIRQ
501: IELGAFRKLR SKNRLQSLQH YLRPAESW

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.