CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51354	Soybean	nucleus	85.28	96.2
VIT_15s0024g00640.t01	Wine grape	plastid	69.5	68.17
GSMUA_Achr7P04860_001	Banana	nucleus	59.4	61.13
CDY31138	Canola	plastid	61.52	60.56
AT1G08540.1	Thale cress	plastid	61.35	60.49
Bra030732.1-P	Field mustard	plastid	60.82	60.18
CDX97496	Canola	plastid	60.64	59.89
Bra018617.1-P	Field mustard	plastid	60.64	59.69
CDX93555	Canola	plastid	60.64	59.69
CDX95052	Canola	plastid	61.17	59.18
Solyc01g081490.2.1	Tomato	nucleus	64.18	59.05
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	57.27	58.94
PGSC0003DMT400079883	Potato	plastid	63.65	58.56
Os11t0448400-02	Rice	nucleus	39.36	52.48
HORVU4Hr1G045100.1	Barley	nucleus	9.57	51.43
HORVU4Hr1G044910.10	Barley	nucleus	42.73	50.52
OQU83379	Sorghum	plastid	45.04	47.3
TraesCS4B01G163500.1	Wheat	plastid	45.57	47.07
TraesCS4A01G157100.1	Wheat	plastid	45.92	47.01
Zm00001d049160_P002	Maize	plastid	45.21	46.11
TraesCS4D01G154500.2	Wheat	plastid	45.92	46.09
EER95113	Sorghum	plastid	40.78	43.56
HORVU4Hr1G060200.1	Barley	plastid	42.2	43.43
Os03t0271100-01	Rice	mitochondrion	41.49	43.33
TraesCS4D01G210000.1	Wheat	plastid	41.49	42.7
Zm00001d028585_P001	Maize	plastid	39.89	42.61
TraesCS4B01G209300.1	Wheat	plastid	41.31	42.6
TraesCS4A01G095200.1	Wheat	plastid	41.13	42.34
KRG96007	Soybean	nucleus	27.84	28.34
KRH32532	Soybean	nucleus, plastid	28.72	28.17
KRH67719	Soybean	nucleus	27.48	27.98
KRH19920	Soybean	plastid	27.84	27.35
KRH04862	Soybean	mitochondrion	25.35	25.95
KRH39837	Soybean	plastid	22.52	25.25
KRH23963	Soybean	plastid	21.99	24.65
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	17.02	23.24
KRH18145	Soybean	mitochondrion, nucleus	20.57	22.66
KRH16520	Soybean	mitochondrion, nucleus	20.39	22.46
KRH53442	Soybean	plastid	19.86	22.09
KRH64502	Soybean	plastid	19.68	21.39

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	EntrezGene:100788815	MapMan:15.6.2.1	EMBL:ACUP02002135	EnsemblPlantsGene:GLYMA_04G002000
GO:GO:0001053	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351
GO:GO:0006352	GO:GO:0006355	GO:GO:0006399	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009658	GO:GO:0009987	GO:GO:0010114
GO:GO:0016043	GO:GO:0016987	GO:GO:0071482	GO:GO:2000142	InterPro:IPR036388	UniProt:K7KHD7
EnsemblPlants:KRH60664	ProteinID:KRH60664	ProteinID:KRH60664.1	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545
PIRSF:PIRSF000767	PRINTS:PR00046	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom
InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2
InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000296E4A6	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:172848..177929

Molecular Weight (calculated)

63423.8 Da

IEP (calculated)

9.297

GRAVY (calculated)

-0.581

Length

564 amino acids

Sequence
(BLAST)

001: MSCLLPHFNC HLDTFRTHPY ALPTHLSKTR PNLCFQPQCV LSATSPSTLL SLEKKLALDA PSDPNTSWPY IAAVSPPLQA NFKSTLSAES LLTNEEAVIV
101: AAASEALALA KAAAKVAKDA ALLVKKKPPA EAEYKSHVSS KSDDLLLKWF KQMEEVEDGV AEESMGAGAE IMEGVDVSPS EEESDLEPSH EELERLQEQL
201: SDSIAVRSRR QTERKAKRVR ATEKATTNFT SFKPGSSSRR KRVSMQEVDY SDPLRYLRTT TSASRLLTPT EEIKLSAGIQ DLLKLEKIQE DLAERFGSQP
301: TFAQWAAVAG VDQKTLRKRL NYGIFCKDKM IKSNIRLVIS IAKNYQGSGM NLQDLVQEGC RGLVKGAEKF DGTKGFKFST YAHWWIKQAV RKSLSDQSRT
401: IRLPFHMVEA TYRVKEARKQ LYSENGRQPD DEEVAEATGL SMKRLNAVLM TPKAPRSLEQ KIGINQNLKP SEVISDPDAE TAEEQLLKQF MKKDLEEALD
501: SLNPRERQVV RWRFGMDDGR TKTLQEIGEM LGVSRERIRQ IESSAFKKLK NKKRTNHLQQ YLVS

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.