Factsheet for Os11t0448400-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G044910.10	Barley	nucleus	82.98	73.58
OQU83379	Sorghum	plastid	85.58	67.41
TraesCS4B01G163500.1	Wheat	plastid	83.92	65.02
Zm00001d049160_P002	Maize	plastid	84.63	64.74
TraesCS4A01G157100.1	Wheat	plastid	84.16	64.61
TraesCS4D01G154500.2	Wheat	plastid	83.92	63.17
Os03t0271100-01	Rice	mitochondrion	67.61	52.96
KRH51354	Soybean	nucleus	49.88	42.2
GSMUA_Achr7P04860_001	Banana	nucleus	52.72	40.69
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	51.54	39.78
KRH60664	Soybean	nucleus	52.48	39.36
VIT_15s0024g00640.t01	Wine grape	plastid	52.25	38.43
CDY31138	Canola	plastid	51.77	38.22
Bra030732.1-P	Field mustard	plastid	51.06	37.89
CDX93555	Canola	plastid	51.06	37.7
Bra018617.1-P	Field mustard	plastid	51.06	37.7
CDX97496	Canola	plastid	50.83	37.65
AT1G08540.1	Thale cress	plastid	50.59	37.41
CDX95052	Canola	plastid	50.59	36.71
Solyc01g081490.2.1	Tomato	nucleus	52.01	35.89
PGSC0003DMT400079883	Potato	plastid	51.54	35.56
Os08t0163400-01	Rice	nucleus	26.24	26.62
Os08t0242800-01	Rice	plastid	30.02	22.2
Os05t0586600-01	Rice	plastid	16.55	19.72
Os05t0589200-01	Rice	plasma membrane	20.8	18.97

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	UniProt:A0A0P0Y206	ProteinID:BAT13897.1	GO:GO:0001053
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016043	GO:GO:2000142	InterPro:IPR036388	EnsemblPlantsGene:Os11g0448400	EnsemblPlants:Os11t0448400-02
PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046	ScanProsite:PS00716
PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946
TIGRFAMs:TIGR02937	UniParc:UPI0003939D03	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

SIGMA FACTOR 2ARNA polymerase sigma factor, region 2 domain containing protein. (Os11t0448400-01);Similar to Sigma-70 region 3 family protein, expressed. (Os11t0448400-02)

Coordinates

chr11:+:14976460..14979767

Molecular Weight (calculated)

47930.7 Da

IEP (calculated)

10.444

GRAVY (calculated)

-0.613

Length

423 amino acids

Sequence
(BLAST)

001: RNTRPKKAVV NYLANEILRT EMKPNILDKY SDGILSEEIE SYGILSDEAE LDGDTQDIPS IAVKSARQTE RRARRTRAAI KAATIVRTSP KPATSSKKKR
101: SKGASSGTNP LGSLWKMTGR RLLTAKEEVE FSEGIQDLLK LEAIQAELAE YNGGQPTFAQ WATAAGVDER TLRKRLDHGI YCKNRMVTSN VRLVISIARE
201: FEGPGMELYD LIQEGMQGLI RGAEKFDASK GFRFSTYSHW WIKQAMRKSV SEQSQIFRLP AHMVEASYRV KECIKRLRRK LKRRPTNEEI AADTGMPIKR
301: VEAAVNLPKY SVSLDSKIGS TDMTYQEVTA DPTAETAEEM LNRLSMKRDV HKALDTLTTR ERQVVTLRFG LEDGRIRTLQ EIGNTMGVSR ERIRQIESAA
401: FRKLRSKKRV NALKDYLVPV GNW

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.