Factsheet for PGSC0003DMT400079883

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g081490.2.1	Tomato	nucleus	97.55	97.55
VIT_15s0024g00640.t01	Wine grape	plastid	65.91	70.26
KRH51354	Soybean	nucleus	54.16	66.4
KRH60664	Soybean	nucleus	58.56	63.65
GSMUA_Achr7P04860_001	Banana	nucleus	56.44	63.14
AT1G08540.1	Thale cress	plastid	58.89	63.11
Bra030732.1-P	Field mustard	plastid	58.4	62.81
CDY31138	Canola	plastid	58.24	62.3
CDX97496	Canola	plastid	57.75	62.0
CDX93555	Canola	plastid	57.42	61.43
Bra018617.1-P	Field mustard	plastid	57.26	61.26
CDX95052	Canola	plastid	57.91	60.89
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	54.32	60.77
HORVU4Hr1G045100.1	Barley	nucleus	9.46	55.24
Os11t0448400-02	Rice	nucleus	35.56	51.54
HORVU4Hr1G044910.10	Barley	nucleus	39.15	50.31
OQU83379	Sorghum	plastid	42.9	48.98
Zm00001d049160_P002	Maize	plastid	42.41	47.02
TraesCS4B01G163500.1	Wheat	plastid	41.6	46.7
TraesCS4A01G157100.1	Wheat	plastid	41.44	46.1
TraesCS4D01G154500.2	Wheat	plastid	41.6	45.37
EER95113	Sorghum	plastid	37.68	43.75
Os03t0271100-01	Rice	mitochondrion	38.34	43.52
PGSC0003DMT400010456	Potato	nucleus	4.89	43.48
HORVU4Hr1G060200.1	Barley	plastid	38.83	43.43
TraesCS4B01G209300.1	Wheat	plastid	37.85	42.41
TraesCS4A01G095200.1	Wheat	plastid	37.85	42.34
TraesCS4D01G210000.1	Wheat	plastid	37.85	42.34
Zm00001d028585_P001	Maize	plastid	36.38	42.23
PGSC0003DMT400017455	Potato	nucleus	16.48	36.86
PGSC0003DMT400055506	Potato	nucleus, plastid	25.45	26.8
PGSC0003DMT400069555	Potato	nucleus	20.72	25.15
PGSC0003DMT400065483	Potato	mitochondrion	22.51	24.86
PGSC0003DMT400023432	Potato	plastid	20.39	24.22
PGSC0003DMT400068109	Potato	nucleus	19.25	19.34

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	EntrezGene:102585657	MapMan:15.6.2.1	GO:GO:0001053	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355
GO:GO:0006399	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009658	GO:GO:0009987	GO:GO:0010114	GO:GO:0016043	GO:GO:0016987
GO:GO:0071482	GO:GO:2000142	GO:GO:2001141	InterPro:IPR036388	UniProt:M1D2M3	PFAM:PF04539
PFAM:PF04542	PFAM:PF04545	EnsemblPlantsGene:PGSC0003DMG400031111	PGSC:PGSC0003DMG400031111	EnsemblPlants:PGSC0003DMT400079883	PIRSF:PIRSF000767
PRINTS:PR00046	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000294E2E2	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_006359117.1
SEG:seg	:	:	:	:	:

Description

SIGB (SIGMA FACTOR B) [Source:PGSC_GENE;Acc:PGSC0003DMG400031111]

Coordinates

chr1:-:67245732..67251341

Molecular Weight (calculated)

67918.3 Da

IEP (calculated)

9.652

GRAVY (calculated)

-0.435

Length

613 amino acids

Sequence
(BLAST)

001: MSYLLPQFLS LPDAFVICAK TQQQTTIQLS KSRDHIHLRT QCILSTTSAV TSTATSTVLG IEKLQLPSIE ILSNSVAAER SWKSPSAATT TVPDIQKLKL
101: PSFEANPDSV APDRPWTYTG AVGPPAEANT KPENSLASEE AIVAAAAAEA VALAKAALKG AQDAVMLVGY NNLNDSDNVG RGTLSEARTA PFESVHLAQP
201: GETRRVGVCA ELNGSEMKWT GSSLFRETLT DSDDLEPSPE ELEILQSQLS NVIAVKSNRQ TERKAKRAKS VEKAAANVVT VKSGSTSRKK RASVQDVDYS
301: DPLRYLRGTT CSSRLLTASE EQELSRGIQD LLKLERLQVE LTERCGGQPT FTQWAAAAGV DQMTLRKRLN YGILCKDKMI KSNVRLVISI AKNYQGVGMN
401: LQDLVQEGCR GLVRGAEKFD ATKGFKFSTY AHWWIKQAVR KSLSDQSRMI RLPFHMVEAT YRVKEARKQL LTENGRHPND AEVAEAAGLS MKRLAAVMLT
501: PKAPRSLDQK IGFNESLKPS EVLADPEAET SEEILTKQFM RQDLEKVLDT LNPREKQVVR WRFGLEDGRM KTLQEIGELM GVSRERIRQI ESCAFRKLKN
601: KKRTKFLQQY INA

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.