Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G044910.10 | Barley | nucleus | 80.0 | 17.61 |
| HORVU4Hr1G060200.1 | Barley | plastid | 66.67 | 12.77 |
| KRH51354 | Soybean | nucleus | 48.57 | 10.2 |
| GSMUA_Achr7P17330_001 | Banana | nucleus, plastid | 51.43 | 9.85 |
| GSMUA_Achr7P04860_001 | Banana | nucleus | 50.48 | 9.67 |
| Solyc01g081490.2.1 | Tomato | nucleus | 56.19 | 9.62 |
| KRH60664 | Soybean | nucleus | 51.43 | 9.57 |
| PGSC0003DMT400079883 | Potato | plastid | 55.24 | 9.46 |
| Bra030732.1-P | Field mustard | plastid | 50.48 | 9.3 |
| CDX97496 | Canola | plastid | 50.48 | 9.28 |
| AT1G08540.1 | Thale cress | plastid | 50.48 | 9.27 |
| CDY31138 | Canola | plastid | 49.52 | 9.08 |
| Bra018617.1-P | Field mustard | plastid | 48.57 | 8.9 |
| CDX93555 | Canola | plastid | 48.57 | 8.9 |
| VIT_15s0024g00640.t01 | Wine grape | plastid | 48.57 | 8.87 |
| CDX95052 | Canola | plastid | 48.57 | 8.75 |
| HORVU7Hr1G069520.2 | Barley | nucleus | 20.0 | 7.0 |
| HORVU5Hr1G125110.10 | Barley | plastid | 32.38 | 6.15 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G045100.1 | EnsemblPlantsGene:HORVU4Hr1G045100 | Gene3D:1.20.120.1810 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006352 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:RNA_pol_sigma_r2 | PANTHER:PTHR30603 | PANTHER:PTHR30603:SF25 | SUPFAM:SSF88946 | UniParc:UPI000B483D58 | UniProt:A0A287NXK7 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:360110543..360110859
Molecular Weight (calculated)
11436.6 Da
IEP (calculated)
4.611
GRAVY (calculated)
-0.176
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: RCSTGSAAGG AMAVSLESVL DLNMQDYLEL VQDLLKLEAI QGELAEYNGG QPTFPQWAAA AGTDENTLRK RLDHGIHCKN RMVTSNVRLV ISIAREFEGP
101: GLELY
101: GLELY
001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS
Arabidopsis Description
SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.