Factsheet for Os05t0586600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	nucleus

plastid: 17148693

extracellular: 25047395

gfp PMID: 17148693 doi

Y Kubota, A Miyao, H Hirochika, Y Tozawa, H Yasuda, Y Tsunoyama, Y Niwa, S Imamura, M Shirai, M Asayama

Laboratory of Molecular Genetics, Collage of Agriculture, Ibaraki University, Ami, Inashiki, Ibaraki, 300-0393 Japan.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18781	Sorghum	plastid	56.34	39.92
TraesCS1B01G461600.1	Wheat	plastid	55.21	39.84
TraesCS1D01G436500.1	Wheat	plastid	55.21	39.68
TraesCS1A01G426700.1	Wheat	plastid	54.65	39.27
Zm00001d039194_P001	Maize	plastid	54.65	39.03
Bra026466.1-P	Field mustard	nucleus	43.38	31.69
GSMUA_Achr7P24590_001	Banana	plastid	44.51	31.29
CDY19846	Canola	nucleus	42.82	31.15
KRH53442	Soybean	plastid	43.1	30.18
PGSC0003DMT400023432	Potato	plastid	43.66	30.04
CDX87140	Canola	plastid	42.54	30.02
Solyc03g007370.2.1	Tomato	plastid	43.1	29.71
Bra009735.1-P	Field mustard	plastid	42.54	29.61
VIT_16s0050g02520.t01	Wine grape	plastid	42.82	29.34
KRH16520	Soybean	mitochondrion, nucleus	42.25	29.3
KRH18145	Soybean	mitochondrion, nucleus	41.41	28.71
AT5G24120.3	Thale cress	nucleus	41.69	28.63
KRH64502	Soybean	plastid	41.41	28.32
CDX80416	Canola	nucleus	42.25	26.74
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	41.97	25.38
Os08t0163400-01	Rice	nucleus	20.0	17.03
Os11t0448400-02	Rice	nucleus	19.72	16.55
Os03t0271100-01	Rice	mitochondrion	22.25	14.63
Os08t0242800-01	Rice	plastid	19.15	11.89
Os05t0589200-01	Rice	plasma membrane	10.99	8.41

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	UniProt:A0A0P0WQU9	ProteinID:BAS95579.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536
GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388
EnsemblPlantsGene:Os05g0586600	EnsemblPlants:Os05t0586600-01	PFAM:PF04539	PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603
PANTHER:PTHR30603:SF4	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like
SUPFAM:SSF88659	SUPFAM:SSF88946	UniParc:UPI0003938610	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

SIGMA FACTOR 5Similar to SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor. (Os05t0586600-01)

Coordinates

chr5:+:29225038..29227592

Molecular Weight (calculated)

39402.3 Da

IEP (calculated)

8.273

GRAVY (calculated)

-0.831

Length

355 amino acids

Sequence
(BLAST)

001: SFLVCHGVHC DDAEPAGIRR VPPALAAAVS ARRALPRRRA AAAHAVVHQL LGARVAGEAG HGQAPSAAAD GVEDRGGRRG AGAGADGLQR GGRRAGEHLQ
101: AEPRRGRGEG RRRGGREEQT DQAEEKRQSG EEPERDGDGE EQPEEEAGTE DGPGEEGGDE EEGGRRGRRG FRISTYALFW IRHSIVRAIT LSNFTRFPFA
201: MESERQEIHR AREELAFELG RAPTEEEVMK KVGLSPARYR DVVRMTRPTY SLHARNRVTQ EELINEVTDD DAIGVDTSSH NTLLRLAIDD LLDSLKPKES
301: VVIRQRFGLD GRGKRTLSEI AGNLNISREM VRKYELKALM KLKHPTRVEY LRRYM

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.