CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19846	Canola	nucleus	92.05	94.88
AT5G24120.3	Thale cress	nucleus	88.27	85.88
CDX80416	Canola	nucleus	88.67	79.5
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	88.07	75.47
KRH53442	Soybean	plastid	65.41	64.89
VIT_16s0050g02520.t01	Wine grape	plastid	65.41	63.51
PGSC0003DMT400023432	Potato	plastid	64.81	63.18
KRH64502	Soybean	plastid	64.61	62.62
Solyc03g007370.2.1	Tomato	plastid	63.02	61.55
KRH18145	Soybean	mitochondrion, nucleus	62.23	61.13
KRH16520	Soybean	mitochondrion, nucleus	61.63	60.55
GSMUA_Achr7P24590_001	Banana	plastid	58.85	58.61
TraesCS1D01G436500.1	Wheat	plastid	47.51	48.38
TraesCS1A01G426700.1	Wheat	plastid	47.51	48.38
TraesCS1B01G461600.1	Wheat	plastid	47.12	48.17
EES18781	Sorghum	plastid	47.91	48.1
Zm00001d039194_P001	Maize	plastid	47.51	48.09
Os05t0586600-01	Rice	plastid	30.02	42.54
CDY66142	Canola	nucleus	18.29	27.22
CDX79708	Canola	endoplasmic reticulum, extracellular	6.76	22.82
CDY52962	Canola	nucleus	21.07	22.08
CDY56127	Canola	nucleus	21.27	21.79
CDY31138	Canola	plastid	23.86	20.94
CDX97496	Canola	plastid	23.66	20.84
CDY18468	Canola	plastid	22.47	20.77
CDX93555	Canola	plastid	23.46	20.59
CDX95052	Canola	plastid	23.46	20.24
CDY09826	Canola	plastid	16.5	19.81
CDX91100	Canola	plastid	15.9	19.56
CDX85630	Canola	plastid	15.71	19.36
CDX76185	Canola	plastid	17.89	13.43
CDY13153	Canola	plastid	17.69	13.24
CDY54028	Canola	cytosol	0.0	0.0
CDY59157	Canola	cytosol	0.0	0.0
CDX73516	Canola	cytosol	0.0	0.0
CDX67575	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:A0A078DD63	EnsemblPlants:CDX87140	ProteinID:CDX87140
ProteinID:CDX87140.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006352
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00146050001
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603
PANTHER:PTHR30603:SF4	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0004EE06FC
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaC09g04550D

Coordinates

chrLK031849:+:716133..719503

Molecular Weight (calculated)

57458.1 Da

IEP (calculated)

10.550

GRAVY (calculated)

-0.543

Length

503 amino acids

Sequence
(BLAST)

001: MGVVFISSSA ARSPLGLSTD LLTHRSTLKK LPSVVAFKAD ESTNSSLIVP PEQEKQKEKR VVTRRKPPKD QNSAPSCSLG VDYNEAAARL ESIYKLSPPA
101: TSLEEDVIDA SKGKVSRRRK RKESDGGEEK KVVVRSNVKK EKRLNLDKRI ALKRNIQEKP VIVSAQKKVT KRQQEEEKIE RLVRDYSASN DVVSLDWKKM
201: KMPPVLSSTE HTWLFKLMQP MKALLEVKDE LQKSLGREPR EAEIAGEINM SVAEVKMKIK VGKAARNKLI KHNLRLVLFV MNKYFQDFTN GPKFQDLCQA
301: GMRGLITAID RFEPKRKFRL STYGLFWIRH AIIRSMTTSN FTRVPFGLES VRVEIYKAKM ELLFELGRLP TDEEVVERLK ISPERYHEVL RAAKPVYSLN
401: TKHSVTQEEF INGITDVDGV GADNRRQPAL LRLALDDVLD SLKPKESLVI RQRYGLDGKG DRTLGEIAGN LNISREMVRK HEVKALMKLK HQARVDYLRQ
501: YII

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.