CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54028	Canola	cytosol	12.09	98.78
CDX67575	Canola	cytosol	12.09	98.78
CDX73516	Canola	cytosol	12.09	98.78
CDY59157	Canola	cytosol	12.09	98.78
Bra014857.1-P	Field mustard	nucleus, plastid	77.16	94.52
CDY13153	Canola	plastid	94.03	93.75
AT3G53920.1	Thale cress	plastid	69.25	81.26
PGSC0003DMT400010456	Potato	nucleus	4.78	46.38
PGSC0003DMT400065483	Potato	mitochondrion	37.61	45.41
Solyc08g065970.2.1	Tomato	nucleus	37.01	45.01
VIT_04s0008g00600.t01	Wine grape	plastid	37.46	44.74
KRH04862	Soybean	mitochondrion	35.97	43.74
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	24.93	40.44
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	30.45	35.79
TraesCS1A01G431600.2	Wheat	plastid	24.93	29.3
TraesCS1B01G467100.1	Wheat	plastid	24.48	28.82
TraesCS1D01G440900.1	Wheat	plastid	24.78	28.72
Zm00001d039181_P001	Maize	nucleus	24.18	28.67
CDX79708	Canola	endoplasmic reticulum, extracellular	6.12	27.52
EES18778	Sorghum	plastid	24.18	27.46
Os05t0589200-01	Rice	plasma membrane	18.21	26.29
CDY66142	Canola	nucleus	12.99	25.74
CDY09826	Canola	plastid	15.07	24.11
CDX93555	Canola	plastid	20.15	23.56
CDX91100	Canola	plastid	14.33	23.47
CDX95052	Canola	plastid	20.3	23.33
CDX85630	Canola	plastid	14.18	23.28
CDY31138	Canola	plastid	19.55	22.86
CDX97496	Canola	plastid	19.25	22.59
CDY18468	Canola	plastid	15.82	19.49
CDY19846	Canola	nucleus	13.43	18.44
CDX87140	Canola	plastid	13.43	17.89
CDY52962	Canola	nucleus	12.39	17.29
CDY56127	Canola	nucleus	12.54	17.11
CDX80416	Canola	nucleus	13.88	16.58
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	13.73	15.67

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	MapMan:17.1.3.1.23	Gene3D:3.30.1230.20	GO:A0A078CH20
EnsemblPlants:CDX76185	ProteinID:CDX76185	ProteinID:CDX76185.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00126490001	InterPro:IPR036388	InterPro:IPR038579
PFAM:PD006584	PFAM:PF01249	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046
ScanProsite:PS00996	PANTHER:PTHR30603	PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	InterPro:Ribosomal_S21e	InterPro:Ribosomal_S21e_CS
InterPro:Ribosomal_S21e_sf	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0004EED605	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

BnaA04g04490D

Coordinates

chrLK031806:+:1666582..1671548

Molecular Weight (calculated)

76077.1 Da

IEP (calculated)

10.237

GRAVY (calculated)

-0.457

Length

670 amino acids

Sequence
(BLAST)

001: MASFNSFPIP KQIVRSSSSS ASRPRILVRS SMASTNSMLV FVPPHPLIKH WLSLLRCDQT PFPFFVRIAS RWSFLSSLKE ETRFHQRDHP LQACGCASAT
101: AENVYVELKD QKENIGVGLV GERMSSSSSS EKANLSRSML QYNLLGKNLL ALEQTFVALE SLRMERDIML QMRKLGAAEL FNTCLSRSRA SSTTSCLPDT
201: GTPELVDTTE EQKTFVHSTR KLRKKARRSS LMTGSDDPGS RTIWEGVDVP RVRKPSKYRK KRERISRNEA EMSQGVKLVA DMERIRTKLE EESGKVASMI
301: CWAEAAGMNE KLLMRNLHFG WYCRDELVKS TRSLVLFLAR NYRGLGIAHE DLIQAGYVGV LQGAERFDHT RGYKFSTYVQ YWIRKSMSTM VSRHARGVHI
401: PASIIRTMSQ IQKARKTLKT SQGIKYPADE EISKLTGYSL KKIRAANQCL KVVGSIDKKV GDCFTTKFLE FTPDTTMESP EEAVMRQSAR REVHNLIEGL
501: EAREKQVMVL RYGLEDYRPK SLEEIGKLLR VSKEGIRKIE RRAMAKIRDQ PKADNLRYYL NQHKALAQAS CPPHGLEMCK YRIFQAIIMQ NEEGVVTELY
601: IPRKCSATNR LITSKDHASV QLNIGHLDAD GIYTGQFTTL ALCGFVRAQG DADSGVDRLW QKKKVETKQL

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.