Factsheet for TraesCS1B01G467100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G431600.2	Wheat	plastid	91.92	91.75
TraesCS1D01G440900.1	Wheat	plastid	92.27	90.83
Os05t0589200-01	Rice	plasma membrane	59.58	73.06
EES18778	Sorghum	plastid	65.03	62.71
Zm00001d039181_P001	Maize	nucleus	60.46	60.88
PGSC0003DMT400010456	Potato	nucleus	5.1	42.03
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	39.72	39.65
VIT_04s0008g00600.t01	Wine grape	plastid	33.39	33.87
Solyc08g065970.2.1	Tomato	nucleus	30.4	31.4
PGSC0003DMT400065483	Potato	mitochondrion	30.4	31.17
KRH04862	Soybean	mitochondrion	29.7	30.67
Bra014857.1-P	Field mustard	nucleus, plastid	29.0	30.16
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	21.62	29.78
AT3G53920.1	Thale cress	plastid	29.17	29.07
TraesCS4B01G163500.1	Wheat	plastid	24.6	25.64
CDX76185	Canola	plastid	28.82	24.48
CDY13153	Canola	plastid	28.82	24.4
TraesCS4B01G209300.1	Wheat	plastid	23.02	23.95
TraesCS1B01G461600.1	Wheat	plastid	17.4	20.12
TraesCS7B01G184800.1	Wheat	nucleus, plastid	17.4	19.37
TraesCS5B01G563800.2	Wheat	plastid	18.63	18.83

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603
PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	EnsemblPlantsGene:TraesCS1B01G467100
EnsemblPlants:TraesCS1B01G467100.1	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:+:677090894..677093451

Molecular Weight (calculated)

63893.1 Da

IEP (calculated)

10.013

GRAVY (calculated)

-0.384

Length

569 amino acids

Sequence
(BLAST)

001: MGLPMARGPC CCSPSPSSSS SSSSSSPWML QAHLPKHPHS PLGGRSVCSE SLRVLALHLL LNRRANLSRR RGEIVGTAVS SPGLLQITEN KASSSPIIKV
101: DAERTSLDGA LDRNAQFNMS AWMDVSHTSS NSLEYNLLMQ NIHVLQSSLA AQDLVVLERD ILVHIEQLGA LKWFNASRSG ATITHTSHET DFALPWNDTK
201: FTPITPLEEQ SDDQLVIIRS GKSQERKLKR IRASEKIPGV CVKASSRKPR KSRRSTSSQF ITEWKNYPGR RRSIVREQSE LLVTIKECAN LEKIRENMVK
301: EGQEVCYDKW AKAAGVDEAA LKSRLQAGYC CRERLLVTTE WLVKYIARTY TGMGTAFEDL LQAGKMGVLD GAERFDSRRG CKFSTYVKYW IRKPMLALLA
401: ENSGVIQLPA RMDCIIRKVR EAKRAIRSST GRNPIDAEIA TFVGASVANV RLARKCSRRV VSLYMEVGAG QNAKFVDVTP DTSLEDPEEA IFRRQLRERL
501: LLVLDRLPAR EGRVLKLRHG LEDGRCRSLE QIGGIYHVSK EWIRKIEKSA MLKLRNEDVH DELKDFCGF

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.