CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	95.01	90.8
CDX87140	Canola	plastid	79.5	88.67
CDY19846	Canola	nucleus	75.58	86.89
AT5G24120.3	Thale cress	nucleus	77.36	83.95
KRH53442	Soybean	plastid	55.62	61.54
VIT_16s0050g02520.t01	Wine grape	plastid	56.68	61.39
KRH18145	Soybean	mitochondrion, nucleus	55.08	60.35
PGSC0003DMT400023432	Potato	plastid	55.44	60.27
KRH16520	Soybean	mitochondrion, nucleus	54.9	60.16
KRH64502	Soybean	plastid	55.08	59.54
Solyc03g007370.2.1	Tomato	plastid	54.55	59.42
GSMUA_Achr7P24590_001	Banana	plastid	52.41	58.22
TraesCS1A01G426700.1	Wheat	plastid	42.42	48.18
TraesCS1D01G436500.1	Wheat	plastid	42.07	47.77
TraesCS1B01G461600.1	Wheat	plastid	41.71	47.56
Zm00001d039194_P001	Maize	plastid	41.0	46.28
EES18781	Sorghum	plastid	41.18	46.11
Os05t0586600-01	Rice	plastid	26.74	42.25
CDY66142	Canola	nucleus	16.4	27.22
CDX79708	Canola	endoplasmic reticulum, extracellular	6.06	22.82
CDY52962	Canola	nucleus	17.65	20.62
CDY31138	Canola	plastid	20.86	20.42
CDY56127	Canola	nucleus	17.65	20.16
CDX97496	Canola	plastid	20.5	20.14
CDX93555	Canola	plastid	20.5	20.07
CDY18468	Canola	plastid	19.43	20.04
CDX95052	Canola	plastid	20.68	19.9
CDY09826	Canola	plastid	14.79	19.81
CDX91100	Canola	plastid	14.44	19.8
CDX85630	Canola	plastid	14.26	19.61
CDX76185	Canola	plastid	16.58	13.88
CDY13153	Canola	plastid	16.4	13.69
CDY54028	Canola	cytosol	0.0	0.0
CDY59157	Canola	cytosol	0.0	0.0
CDX73516	Canola	cytosol	0.0	0.0
CDX67575	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:A0A078CTD0	EnsemblPlants:CDX80416	ProteinID:CDX80416
ProteinID:CDX80416.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006352
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00133484001
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603
PANTHER:PTHR30603:SF4	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0004EE4EDA
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaC07g30280D

Coordinates

chrLK031821:-:309237..312752

Molecular Weight (calculated)

63815.8 Da

IEP (calculated)

10.632

GRAVY (calculated)

-0.537

Length

561 amino acids

Sequence
(BLAST)

001: MVVKPPLYLG PTNAEKTIHV SESKPDDEAS LSPTRQSTIQ TRSEASKDFI VMGVVFISTS AARSPLGLST DLLTQRSSLK KPSIVAFKAD DSIPTNSSLI
101: IVKQKEKRVV ATRRKPCKDT KTRKPLDQNV APSCPLDYNE AAARLESIYK LSPPPATSLE EEDGIDGSSK VRVPRRRKRK ESGEEKKVVV RNNVKKEKRL
201: TLDKRIALKR NVQEKPVSAS SSAREKVTKK QQEEEKIERL VRDYSASNDI VSLDWKKMKI PPVVSSAEHT WLFKLMQPMK ALLQVKDELQ KSMGREPREA
301: EIAGEINMSV AEVKRKIEIG RAARNKLIKT NLRLVLFVMN KYFQDLTNGP KFQDLCQAGM RGLITAIDRF EPKRKLRLST YGLFWIRHAV IRSMTTSNFT
401: RVPFGLESVR VEIYKAKMEL LFEFGRLPTE EEVVKRLKIS PERYREVLRA AKPVFSLNSK HSVTQEEFIK GITDVDGVGA DNRRQLALLR LALDDVLDSL
501: KPKESLVIRQ RYGLDGKGDR TLGEIAGNLN ISREMVRKHE VKALMKLKHQ ARVDYLRQYI I

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.