CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72115
CDX76008
CDX76009
CDY32029
CDY47371
CDY68642

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64860.1	CDX72115	AT3G56710.1	11943170
AT1G64860.1	CDX76008	AT3G56710.1	11943170
AT1G64860.1	CDX76009	AT3G56710.1	11943170
AT1G64860.1	CDY32029	AT3G56710.1	11943170
AT1G64860.1	CDY47371	AT3G56710.1	11943170
AT1G64860.1	CDY68642	AT3G56710.1	11943170

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56127	Canola	nucleus	99.17	96.94
Bra008513.1-P	Field mustard	nucleus	98.96	96.54
AT1G64860.1	Thale cress	nucleus	88.96	85.06
KRH23963	Soybean	plastid	73.12	69.78
KRH39837	Soybean	plastid	72.92	69.58
Solyc03g097320.2.1	Tomato	nucleus, plastid	69.79	65.82
PGSC0003DMT400069555	Potato	nucleus	67.71	64.36
Solyc06g072710.2.1	Tomato	nucleus	67.5	64.16
GSMUA_Achr1P10700_001	Banana	nucleus	55.83	63.36
HORVU7Hr1G069520.2	Barley	nucleus	38.33	61.33
GSMUA_Achr11P...	Banana	nucleus	58.33	61.0
VIT_16s0039g00660.t01	Wine grape	plastid	71.04	59.0
Os08t0163400-01	Rice	nucleus	48.12	55.4
EES13412	Sorghum	plastid	52.5	50.4
Zm00001d049494_P001	Maize	plastid	52.08	49.6
PGSC0003DMT400068109	Potato	nucleus	62.92	49.51
Zm00001d024507_P001	Maize	plastid	45.83	48.89
TraesCS7D01G292000.1	Wheat	plastid	51.88	48.73
TraesCS7A01G297900.2	Wheat	plastid	51.46	48.43
TraesCS7B01G184800.1	Wheat	nucleus, plastid	51.25	48.14
CDY66142	Canola	nucleus	19.58	27.81
CDX85630	Canola	plastid	21.25	25.0
CDY09826	Canola	plastid	21.67	24.82
CDX91100	Canola	plastid	20.83	24.45
CDX79708	Canola	endoplasmic reticulum, extracellular	7.08	22.82
CDX93555	Canola	plastid	25.42	21.29
CDX87140	Canola	plastid	22.08	21.07
CDY19846	Canola	nucleus	21.25	20.9
CDX97496	Canola	plastid	24.79	20.84
CDY18468	Canola	plastid	23.54	20.77
CDY31138	Canola	plastid	24.79	20.77
CDX95052	Canola	plastid	25.21	20.75
CDX80416	Canola	nucleus	20.62	17.65
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	20.42	16.7
CDX76185	Canola	plastid	17.29	12.39
CDY13153	Canola	plastid	17.29	12.35
CDY59157	Canola	cytosol	0.0	0.0
CDX67575	Canola	cytosol	0.0	0.0
CDY54028	Canola	cytosol	0.0	0.0
CDX73516	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:A0A078ISK2	UniProt:A0A078ISK2	EnsemblPlants:CDY52962
ProteinID:CDY52962	ProteinID:CDY52962.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	EnsemblPlantsGene:GSBRNA2T00008232001
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715
PANTHER:PTHR30603	PANTHER:PTHR30603:SF14	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937
UniParc:UPI0004EE4A0F	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaCnng23900DBnaCnng23900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISK2]

Coordinates

chrLK033146:+:41906..44824

Molecular Weight (calculated)

54351.3 Da

IEP (calculated)

10.070

GRAVY (calculated)

-0.489

Length

480 amino acids

Sequence
(BLAST)

001: MATTAVVGLN AGKRLLSSSF YYSDVTEKFL SVNDLCSSQY YYHIASTRSG ITAKKTSSSN YSPSFHSSSR HTQSAKALKE SVDVVQQWLP PGSDQELEED
101: DDTVEALLLL QRSLLEKQWN LSFEKKKKIP VTCSGISARQ RRMGAKKKTN IKVVNSDLFQ NNRVKGGYVK GVISDDVLSH AEVVRLSKKI KSGLRLDEHK
201: SRLKDRLGCE PSDEQLATSL KISRAELQAW LMECNLAREK LAMSNVRLVM SIAQRYDNMG AEMSDLVQGG LIGLLRGIEK FDSSKGFRIS TYVYWWIRQG
301: VSRALVDNSR TLRLPTHLHE RLGLIRNAKL RLQEKGITPS IDRIAESLNM SQKKVRNATE AVSKIFSLDR DAFPSLNGLP GETHHSYIAD NRLENNPWHG
401: YDEWALKDEV SKLISATLGD REREIIRLYY GLDKECLTWE DISKRIGLSR ERVRQVGLVA LEKLKHAARK SKMEAMILKN

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.