Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56710.1 | CDY52962 | AT1G64860.1 | 11943170 |
| AT3G56710.1 | CDY56127 | AT1G64860.1 | 11943170 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007265.1-P | Field mustard | plastid | 97.32 | 97.32 |
| CDY32029 | Canola | nucleus, plastid | 79.19 | 77.12 |
| AT3G56710.1 | Thale cress | nucleus, plastid | 75.84 | 74.83 |
| CDX76009 | Canola | plastid | 75.84 | 73.38 |
| CDY68642 | Canola | plastid | 73.83 | 73.33 |
| CDX76008 | Canola | nucleus | 66.44 | 64.71 |
| CDY47371 | Canola | nucleus | 32.89 | 55.06 |
| CDX79952 | Canola | plastid | 50.34 | 53.57 |
| CDY23869 | Canola | plastid | 50.34 | 53.57 |
| CDY22506 | Canola | plastid | 48.99 | 51.77 |
| CDY35426 | Canola | plastid | 47.65 | 50.35 |
Protein Annotations
| EnsemblPlants:CDX72115 | EnsemblPlantsGene:GSBRNA2T00155923001 | InterPro:VQ | ncoils:Coil | PANTHER:PTHR33624 | PANTHER:PTHR33624:SF2 |
| PFAM:PF05678 | ProteinID:CDX72115 | ProteinID:CDX72115.1 | SEG:seg | UniParc:UPI0004EE7324 | MapMan:26.8.3.3.2 |
Description
BnaC08g27590D
Coordinates
chrLK031795:+:2494321..2495014
Molecular Weight (calculated)
16552.4 Da
IEP (calculated)
4.611
GRAVY (calculated)
-0.561
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSTFLTAT SLDQGKPFPV SRQPSKQKKK TASANKAIKV RYISNPMKVK TCASKFRELV QELTGQDAVD QPEPVFSPST VSDLSPSPPP PENLAPRVLD
101: QEPFDDRVCE YFEPLDGEEM FLPQMSAGFS GFFSNGFYNV NDFGRIDSM
101: QEPFDDRVCE YFEPLDGEEM FLPQMSAGFS GFFSNGFYNV NDFGRIDSM
001: MESSSSTFLT TTSLDKKKPS PVSRKSPKQK KKTTSTNKPI KVRYISNPMR VQTCASKFRE LVQELTGQDA VDLQPEPIYS PSSDDHNLSP PAENLAPRVL
101: HQEPFGERDS DCYEPLNAED MFLPDQMSAG FSGFFSNGFY NVNDFGSIDS M
101: HQEPFGERDS DCYEPLNAED MFLPDQMSAG FSGFFSNGFY NVNDFGSIDS M
Arabidopsis Description
SIB1SIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMX5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.