Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79952 | Canola | plastid | 95.71 | 95.71 |
| CDY22506 | Canola | plastid | 79.29 | 78.72 |
| AT2G41180.1 | Thale cress | plastid | 78.57 | 78.01 |
| CDY35426 | Canola | plastid | 77.86 | 77.31 |
| CDY32029 | Canola | nucleus, plastid | 56.43 | 51.63 |
| CDX72115 | Canola | nucleus, plastid | 53.57 | 50.34 |
| CDY68642 | Canola | plastid | 52.14 | 48.67 |
| CDX76009 | Canola | plastid | 51.43 | 46.75 |
| CDY47371 | Canola | nucleus | 29.29 | 46.07 |
| CDX76008 | Canola | nucleus | 43.57 | 39.87 |
Protein Annotations
| EnsemblPlants:CDY23869 | EnsemblPlantsGene:GSBRNA2T00024301001 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0051091 | InterPro:VQ | PANTHER:PTHR33624 | PFAM:PF05678 | ProteinID:CDY23869 |
| ProteinID:CDY23869.1 | SEG:seg | UniParc:UPI0004EE3265 | UniProt:A0A078GEW1 | MapMan:26.8.3.3.2 | : |
Description
BnaC04g01680DBnaC04g01680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEW1]
Coordinates
chrLK032150:-:350175..350661
Molecular Weight (calculated)
15431.0 Da
IEP (calculated)
4.729
GRAVY (calculated)
-0.694
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSSSTLLTS LNQRQPSSSP TRKPPKQKRK ATTTTNDNKP IKVRYISNPM RVETCPSKFR ELVQELTGQD AELPPDPTTY AAADPQQEEI NPEPLEEVVS
101: EYYSPLDEEV FSAPQMSAGL SAFFSSGFYN VNALGSIGSL
101: EYYSPLDEEV FSAPQMSAGL SAFFSSGFYN VNALGSIGSL
001: MDQSSSTLLI NQRKSSSSPT RIPPKQKRKS TTTHKPIKVR YISNPMRVET CPSKFRELVQ ELTGQDAADL PPSPTTFTAV DLHRPCESEM NLEPLDGEVR
101: GEYYSPLDEE VFNAPQMSAG LSGFFSSGFY NVNALGSIGS L
101: GEYYSPLDEE VFNAPQMSAG LSGFFSSGFY NVNALGSIGS L
Arabidopsis Description
SIB2Sigma factor binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80669]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.