Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- nucleus 2
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56710.1 | CDY52962 | AT1G64860.1 | 11943170 |
| AT3G56710.1 | CDY56127 | AT1G64860.1 | 11943170 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72115 | Canola | nucleus, plastid | 77.12 | 79.19 |
| AT3G56710.1 | Thale cress | nucleus, plastid | 74.51 | 75.5 |
| CDX76009 | Canola | plastid | 75.16 | 74.68 |
| CDY68642 | Canola | plastid | 73.2 | 74.67 |
| CDX76008 | Canola | nucleus | 62.75 | 62.75 |
| CDY47371 | Canola | nucleus | 34.64 | 59.55 |
| CDY23869 | Canola | plastid | 51.63 | 56.43 |
| CDX79952 | Canola | plastid | 50.33 | 55.0 |
| CDY22506 | Canola | plastid | 49.02 | 53.19 |
| CDY35426 | Canola | plastid | 48.37 | 52.48 |
Protein Annotations
| EnsemblPlants:CDY32029 | EnsemblPlantsGene:GSBRNA2T00050878001 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0051091 | InterPro:VQ | PANTHER:PTHR33624 | PANTHER:PTHR33624:SF2 | PFAM:PF05678 |
| ProteinID:CDY32029 | ProteinID:CDY32029.1 | SEG:seg | UniParc:UPI0004EDB9D2 | UniProt:A0A078H3T1 | MapMan:26.8.3.3.2 |
Description
BnaC06g16070DBnaC06g16070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3T1]
Coordinates
chrLK032284:-:448627..449088
Molecular Weight (calculated)
17285.3 Da
IEP (calculated)
5.687
GRAVY (calculated)
-0.654
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSSSSTFL TTTSLDQRNP SLVSRKPPKQ KKKTSSTNKH IKVRYISNPM RVKTCASKFR ELVQELTGQD AVDLQLEPVF PPSALSDHSP SLPPPENLDL
101: RVLQQEPFDD QVTDYYEPLD GEDMFLPHMS AGFSGLFSNG FYNVNDFRRI DSV
101: RVLQQEPFDD QVTDYYEPLD GEDMFLPHMS AGFSGLFSNG FYNVNDFRRI DSV
001: MESSSSTFLT TTSLDKKKPS PVSRKSPKQK KKTTSTNKPI KVRYISNPMR VQTCASKFRE LVQELTGQDA VDLQPEPIYS PSSDDHNLSP PAENLAPRVL
101: HQEPFGERDS DCYEPLNAED MFLPDQMSAG FSGFFSNGFY NVNDFGSIDS M
101: HQEPFGERDS DCYEPLNAED MFLPDQMSAG FSGFFSNGFY NVNDFGSIDS M
Arabidopsis Description
SIB1SIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMX5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.