CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY52962
CDY56127

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56710.1	CDY52962	AT1G64860.1	11943170
AT3G56710.1	CDY56127	AT1G64860.1	11943170

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76009	Canola	plastid	95.33	92.86
CDX72115	Canola	nucleus, plastid	73.33	73.83
CDY32029	Canola	nucleus, plastid	74.67	73.2
CDX76008	Canola	nucleus	72.0	70.59
AT3G56710.1	Thale cress	nucleus, plastid	70.0	69.54
CDY47371	Canola	nucleus	36.67	61.8
CDX79952	Canola	plastid	48.67	52.14
CDY23869	Canola	plastid	48.67	52.14
CDY22506	Canola	plastid	46.67	49.65
CDY35426	Canola	plastid	45.33	48.23

Protein Annotations

EnsemblPlants:CDY68642	EnsemblPlantsGene:GSBRNA2T00076523001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0051091	InterPro:VQ	PANTHER:PTHR33624	PANTHER:PTHR33624:SF2	PFAM:PF05678
ProteinID:CDY68642	ProteinID:CDY68642.1	SEG:seg	UniParc:UPI0004EE2241	UniProt:A0A078JT89	MapMan:26.8.3.3.2

Description

BnaUnng02910DBnaUnng02910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JT89]

Coordinates

chrLK037705:-:1466..2001

Molecular Weight (calculated)

16996.9 Da

IEP (calculated)

5.241

GRAVY (calculated)

-0.706

Length

150 amino acids

Sequence
(BLAST)

001: MKSSSWTFLT TTSLDQKNPS PATPKQMKKR ASRNKPIKVR YISNPMRVKT CASKFRELVQ ELTGQDAVDL ELEPEFSPSA VSDHSPSPPP PETFAPHIPH
101: QEPFDDLVAG YYEPLDGEEM FLSQMSRGFS GYFSNEFYNV NDYLGRIDSL

Best Arabidopsis Sequence Match ( AT3G56710.1 )
(BLAST)

001: MESSSSTFLT TTSLDKKKPS PVSRKSPKQK KKTTSTNKPI KVRYISNPMR VQTCASKFRE LVQELTGQDA VDLQPEPIYS PSSDDHNLSP PAENLAPRVL
101: HQEPFGERDS DCYEPLNAED MFLPDQMSAG FSGFFSNGFY NVNDFGSIDS M

Arabidopsis Description

SIB1SIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMX5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.