Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72115 | Canola | nucleus, plastid | 74.83 | 75.84 |
| CDY32029 | Canola | nucleus, plastid | 75.5 | 74.51 |
| Bra007265.1-P | Field mustard | plastid | 73.51 | 74.5 |
| CDY68642 | Canola | plastid | 69.54 | 70.0 |
| Bra014674.1-P | Field mustard | plastid | 68.87 | 67.53 |
| CDX76009 | Canola | plastid | 68.87 | 67.53 |
| Bra014675.1-P | Field mustard | plastid | 70.2 | 65.84 |
| CDX76008 | Canola | nucleus | 60.93 | 60.13 |
| CDY47371 | Canola | nucleus | 33.77 | 57.3 |
| AT2G41180.1 | Thale cress | plastid | 50.99 | 54.61 |
Protein Annotations
| MapMan:26.8.3.3.2 | EntrezGene:824838 | UniProt:A0A178VMX5 | ProteinID:AEE79554.1 | EMBL:AF224762 | ProteinID:ANM63329.1 |
| ArrayExpress:AT3G56710 | EnsemblPlantsGene:AT3G56710 | RefSeq:AT3G56710 | TAIR:AT3G56710 | RefSeq:AT3G56710-TAIR-G | EnsemblPlants:AT3G56710.1 |
| TAIR:AT3G56710.1 | EMBL:AY042831 | EMBL:BT002607 | ProteinID:CAC00734.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009816 |
| GO:GO:0009987 | GO:GO:0051091 | GO:GO:0071482 | RefSeq:NP_001325423.1 | RefSeq:NP_191230.1 | ProteinID:OAP06463.1 |
| PFAM:PF05678 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33624 | PANTHER:PTHR33624:SF2 | UniProt:Q9LDH1 | Symbol:SIB1 |
| UniParc:UPI00000AC44E | InterPro:VQ | SEG:seg | : | : | : |
Description
SIB1SIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMX5]
Coordinates
chr3:-:21006638..21008064
Molecular Weight (calculated)
16862.6 Da
IEP (calculated)
5.242
GRAVY (calculated)
-0.768
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSSSTFLT TTSLDKKKPS PVSRKSPKQK KKTTSTNKPI KVRYISNPMR VQTCASKFRE LVQELTGQDA VDLQPEPIYS PSSDDHNLSP PAENLAPRVL
101: HQEPFGERDS DCYEPLNAED MFLPDQMSAG FSGFFSNGFY NVNDFGSIDS M
101: HQEPFGERDS DCYEPLNAED MFLPDQMSAG FSGFFSNGFY NVNDFGSIDS M
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.