Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra008513.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56710.1 | Bra008513.1-P | AT1G64860.1 | 11943170 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76008 | Canola | nucleus | 81.99 | 86.27 |
| Bra014674.1-P | Field mustard | plastid | 77.64 | 81.17 |
| Bra007265.1-P | Field mustard | plastid | 67.08 | 72.48 |
| AT3G56710.1 | Thale cress | nucleus, plastid | 65.84 | 70.2 |
| CDY47371 | Canola | nucleus | 37.27 | 67.42 |
| Bra004604.1-P | Field mustard | plastid | 42.86 | 49.29 |
| Bra000216.1-P | Field mustard | plastid | 39.75 | 45.39 |
Protein Annotations
| EnsemblPlants:Bra014675.1 | EnsemblPlants:Bra014675.1-P | EnsemblPlantsGene:Bra014675 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0051091 | InterPro:VQ | PANTHER:PTHR33624 | PANTHER:PTHR33624:SF2 |
| PFAM:PF05678 | SEG:seg | UniParc:UPI000254477A | UniProt:M4DDV6 | MapMan:26.8.3.3.2 | : |
Description
AT3G56710 (E=4e-042) SIB1 | SIB1 (SIGMA FACTOR BINDING PROTEIN 1); binding / protein binding
Coordinates
chrA04:+:2158410..2158895
Molecular Weight (calculated)
18102.1 Da
IEP (calculated)
4.850
GRAVY (calculated)
-0.725
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSSSSWTFL TTTSLDQRNP SRVSKKTPKQ MKKTASRNKP IKVRYISNPM RVKTCASKFR ELVQELTGQD AVDLELEPEF SPSAVSDDSS SPRPPENLAP
101: RDLHQEPFDD RVTGYYEPLN GEEMFVSQLS GGFSGYFSNE FYNGDVDGFG KIDLCDDILS I
101: RDLHQEPFDD RVTGYYEPLN GEEMFVSQLS GGFSGYFSNE FYNGDVDGFG KIDLCDDILS I
001: MESSSSTFLT TTSLDKKKPS PVSRKSPKQK KKTTSTNKPI KVRYISNPMR VQTCASKFRE LVQELTGQDA VDLQPEPIYS PSSDDHNLSP PAENLAPRVL
101: HQEPFGERDS DCYEPLNAED MFLPDQMSAG FSGFFSNGFY NVNDFGSIDS M
101: HQEPFGERDS DCYEPLNAED MFLPDQMSAG FSGFFSNGFY NVNDFGSIDS M
Arabidopsis Description
SIB1SIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMX5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.