Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra008513.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56710.1 | Bra008513.1-P | AT1G64860.1 | 11943170 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76009 | Canola | plastid | 100.0 | 100.0 |
| Bra014675.1-P | Field mustard | plastid | 81.17 | 77.64 |
| Bra007265.1-P | Field mustard | plastid | 72.73 | 75.17 |
| AT3G56710.1 | Thale cress | nucleus, plastid | 67.53 | 68.87 |
| Bra004604.1-P | Field mustard | plastid | 46.1 | 50.71 |
| Bra000216.1-P | Field mustard | plastid | 42.86 | 46.81 |
Protein Annotations
| EnsemblPlants:Bra014674.1 | EnsemblPlants:Bra014674.1-P | EnsemblPlantsGene:Bra014674 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0051091 | InterPro:VQ | PANTHER:PTHR33624 | PANTHER:PTHR33624:SF2 |
| PFAM:PF05678 | SEG:seg | UniParc:UPI0002544779 | UniProt:M4DDV5 | MapMan:26.8.3.3.2 | : |
Description
AT3G56710 (E=9e-039) SIB1 | SIB1 (SIGMA FACTOR BINDING PROTEIN 1); binding / protein binding
Coordinates
chrA04:+:2155583..2156047
Molecular Weight (calculated)
17348.2 Da
IEP (calculated)
4.963
GRAVY (calculated)
-0.634
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSSSSSSWT FLTTTSLDQR NPSPVVTSKQ MKKTASRNKP IKVRYISNPM RVKTCASKFR ELVQELTGQD AVDLELEPEF SPSAVSDHSP SPPPPETFAP
101: HIPHQEPFDD LVAGYYEPLD GEEMFLSQMS RGFSGYFSNE FYNVNDYLGR IDSL
101: HIPHQEPFDD LVAGYYEPLD GEEMFLSQMS RGFSGYFSNE FYNVNDYLGR IDSL
001: MESSSSTFLT TTSLDKKKPS PVSRKSPKQK KKTTSTNKPI KVRYISNPMR VQTCASKFRE LVQELTGQDA VDLQPEPIYS PSSDDHNLSP PAENLAPRVL
101: HQEPFGERDS DCYEPLNAED MFLPDQMSAG FSGFFSNGFY NVNDFGSIDS M
101: HQEPFGERDS DCYEPLNAED MFLPDQMSAG FSGFFSNGFY NVNDFGSIDS M
Arabidopsis Description
SIB1SIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMX5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.