CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23963	Soybean	plastid	96.62	96.62
CDY52962	Canola	nucleus	69.58	72.92
CDY56127	Canola	nucleus	70.18	71.89
Bra008513.1-P	Field mustard	nucleus	69.98	71.54
AT1G64860.1	Thale cress	nucleus	70.58	70.72
Solyc03g097320.2.1	Tomato	nucleus, plastid	69.58	68.76
PGSC0003DMT400069555	Potato	nucleus	66.4	66.14
Solyc06g072710.2.1	Tomato	nucleus	65.61	65.35
GSMUA_Achr1P10700_001	Banana	nucleus	54.87	65.25
HORVU7Hr1G069520.2	Barley	nucleus	37.38	62.67
VIT_16s0039g00660.t01	Wine grape	plastid	70.97	61.76
GSMUA_Achr11P...	Banana	nucleus	56.26	61.66
Os08t0163400-01	Rice	nucleus	48.51	58.51
EES13412	Sorghum	plastid	53.48	53.8
TraesCS7D01G292000.1	Wheat	plastid	53.88	53.03
Zm00001d049494_P001	Maize	plastid	53.08	52.98
TraesCS7B01G184800.1	Wheat	nucleus, plastid	53.68	52.84
TraesCS7A01G297900.2	Wheat	plastid	53.48	52.75
Zm00001d024507_P001	Maize	plastid	47.12	52.67
PGSC0003DMT400068109	Potato	nucleus	61.23	50.49
KRH51354	Soybean	nucleus	24.85	25.0
KRH60664	Soybean	nucleus	25.25	22.52
KRG96007	Soybean	nucleus	24.65	22.38
KRH67719	Soybean	nucleus	24.06	21.84
KRH53442	Soybean	plastid	20.48	20.32
KRH19920	Soybean	plastid	22.86	20.03
KRH32532	Soybean	nucleus, plastid	22.86	20.0
KRH64502	Soybean	plastid	19.68	19.08
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	15.51	18.89
KRH16520	Soybean	mitochondrion, nucleus	19.09	18.75
KRH18145	Soybean	mitochondrion, nucleus	18.69	18.36
KRH04862	Soybean	mitochondrion	20.08	18.33

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	EntrezGene:100794548	MapMan:15.6.2.1	EMBL:ACUP02006007	EnsemblPlantsGene:GLYMA_09G223600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	UniProt:I1L5H1	InterPro:IPR036388	EnsemblPlants:KRH39837
ProteinID:KRH39837	ProteinID:KRH39837.1	ProteinID:KRH39838.1	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545
PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603	PANTHER:PTHR30603:SF14	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0002338014	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:44862159..44867193

Molecular Weight (calculated)

56933.9 Da

IEP (calculated)

10.001

GRAVY (calculated)

-0.430

Length

503 amino acids

Sequence
(BLAST)

001: MATAAVIGLS GGKRLLSSSY HYSDVIEKLS YGSDFGSTHY QIVPTKSLIA AKKSSNYTPT FPASNQQNQS IKALKEHVDD APTIADSWFQ SCNSNDLEVE
101: SSEMGYSVEA LLLLQKSMLE KQWNLSFERE VLTEHSSKGK KCKKVAVTCS GVSARQRRMN TKRKTAIKTC GAMQLKSKIS PELLQHRLKG YVKGIVSEEL
201: LSHAEVVNLS ERIKVGLSLE EHKSRLKERL GCEPSDDQMA ISLKISRTEL RARMIECTLA REKLAMSNVR LVMSIAQKYD NLGAEMGDLV QGGLIGLLRG
301: IEKFDSSKGF KISTYVYWWI RQGVSRALVE NSRTLRLPAH LHERLSLIRN AKFRLEERGI TPTIDRIAKY LNMSQKKVRN ATEAISKTIS LDREAFPSLN
401: GIQGETHHSY IADDRVENIP WNGVDEWALK DEVNKLINVT LVEREREIIR LYYGLDKEGL TWEDISKRIG LSRERVRQVG LVALEKLKHA ARKRQMEAML
501: LKH

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.