CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39837	Soybean	plastid	96.62	96.62
CDY52962	Canola	nucleus	69.78	73.12
CDY56127	Canola	nucleus	70.18	71.89
Bra008513.1-P	Field mustard	nucleus	69.98	71.54
AT1G64860.1	Thale cress	nucleus	70.38	70.52
Solyc03g097320.2.1	Tomato	nucleus, plastid	69.58	68.76
PGSC0003DMT400069555	Potato	nucleus	67.0	66.73
Solyc06g072710.2.1	Tomato	nucleus	66.2	65.94
GSMUA_Achr1P10700_001	Banana	nucleus	55.27	65.72
HORVU7Hr1G069520.2	Barley	nucleus	37.77	63.33
GSMUA_Achr11P...	Banana	nucleus	57.26	62.75
VIT_16s0039g00660.t01	Wine grape	plastid	71.17	61.94
Os08t0163400-01	Rice	nucleus	49.3	59.47
EES13412	Sorghum	plastid	54.67	55.0
Zm00001d049494_P001	Maize	plastid	54.27	54.17
Zm00001d024507_P001	Maize	plastid	48.11	53.78
TraesCS7D01G292000.1	Wheat	plastid	54.27	53.42
TraesCS7B01G184800.1	Wheat	nucleus, plastid	54.08	53.23
TraesCS7A01G297900.2	Wheat	plastid	53.88	53.14
PGSC0003DMT400068109	Potato	nucleus	61.43	50.66
KRH51354	Soybean	nucleus	24.25	24.4
KRG96007	Soybean	nucleus	24.65	22.38
KRH60664	Soybean	nucleus	24.65	21.99
KRH67719	Soybean	nucleus	24.06	21.84
KRH19920	Soybean	plastid	23.06	20.21
KRH53442	Soybean	plastid	20.28	20.12
KRH32532	Soybean	nucleus, plastid	22.86	20.0
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	15.51	18.89
KRH16520	Soybean	mitochondrion, nucleus	19.09	18.75
KRH64502	Soybean	plastid	19.28	18.69
KRH18145	Soybean	mitochondrion, nucleus	18.69	18.36
KRH04862	Soybean	mitochondrion	20.08	18.33

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	EntrezGene:100801884	MapMan:15.6.2.1	EMBL:ACUP02007164	EnsemblPlantsGene:GLYMA_12G013300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	UniProt:I1LP24	InterPro:IPR036388	EnsemblPlants:KRH23963
ProteinID:KRH23963	ProteinID:KRH23963.1	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046
ScanProsite:PS00715	PANTHER:PTHR30603	PANTHER:PTHR30603:SF14	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946
TIGRFAMs:TIGR02937	UniParc:UPI000233CA1F	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:964404..969175

Molecular Weight (calculated)

57068.1 Da

IEP (calculated)

10.028

GRAVY (calculated)

-0.432

Length

503 amino acids

Sequence
(BLAST)

001: MATAAVIGLS GGKRLLSSSY HYSDIIEKLS YGSDFGSTHY QIVPTKSLIV AKKSSNYTPT FPASNQQNQS IKALKEHVDD APTIADPWFQ SYNSNDLEVE
101: SSEMGYSVEA LLLLQKSMLE KQWNLSFERE VLTENSSKGK KCRKVAVTCS GVSARQRRMN TKRKTAIKTC GAMQLKSKIS PELLQHRLKG YVKGLVSEEL
201: LSHAEVVNLS EKIKVGLSLE EHKSRLKEKL GCEPSDDQMA TSLKISRTEL RARMIECSLA REKLAMSNVR LVMSIAQKYD NLGAEMGDLV QGGLIGLLRG
301: IEKFDSSKGF KISTYVYWWI RQGVSRALVE NSRTLRLPAH LHERLSLIRN AKFRLEERGI TPTIDRIAKY LNMSQKKVRN ATEAISKIIS LDREAFPSLN
401: GLQGETHHSY IADNRVENIP WNGVDEWALK DEVNRLINVT LVEREREIIR LYYGLEKECL TWEDISKRIG LSRERVRQVG LVALEKLKHA ARKRQMEAML
501: LKH

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.