Factsheet for TraesCS7D01G292000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G184800.1	Wheat	nucleus, plastid	98.83	98.83
TraesCS7A01G297900.2	Wheat	plastid	98.63	98.82
HORVU7Hr1G069520.2	Barley	nucleus	54.21	92.33
Os08t0163400-01	Rice	nucleus	67.91	83.21
EES13412	Sorghum	plastid	76.32	78.0
Zm00001d049494_P001	Maize	plastid	76.71	77.78
Zm00001d024507_P001	Maize	plastid	66.93	76.0
GSMUA_Achr1P10700_001	Banana	nucleus	50.29	60.76
GSMUA_Achr11P...	Banana	nucleus	50.68	56.43
KRH23963	Soybean	plastid	53.42	54.27
KRH39837	Soybean	plastid	53.03	53.88
CDY52962	Canola	nucleus	48.73	51.88
PGSC0003DMT400069555	Potato	nucleus	50.88	51.49
CDY56127	Canola	nucleus	49.32	51.32
Solyc06g072710.2.1	Tomato	nucleus	50.68	51.29
Bra008513.1-P	Field mustard	nucleus	49.32	51.22
Solyc03g097320.2.1	Tomato	nucleus, plastid	50.68	50.88
AT1G64860.1	Thale cress	nucleus	49.51	50.4
VIT_16s0039g00660.t01	Wine grape	plastid	51.86	45.85
PGSC0003DMT400068109	Potato	nucleus	44.23	37.05
TraesCS4D01G210000.1	Wheat	plastid	23.29	21.72
TraesCS5D01G551200.1	Wheat	plastid	23.29	21.29
TraesCS4D01G154500.2	Wheat	plastid	22.9	20.82
TraesCS1D01G436500.1	Wheat	plastid	19.96	20.65
TraesCS1D01G440900.1	Wheat	plastid	19.37	17.13

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715
PANTHER:PTHR30603	PANTHER:PTHR30603:SF14	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937
EnsemblPlantsGene:TraesCS7D01G292000	EnsemblPlants:TraesCS7D01G292000.1	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr7D:-:353082006..353084621

Molecular Weight (calculated)

57002.3 Da

IEP (calculated)

10.267

GRAVY (calculated)

-0.491

Length

511 amino acids

Sequence
(BLAST)

001: MTATPALIGL SAGNRLLSTS FGPPNDLLSD KVNSHMSSAA GDAHGSSSLQ FAPPAASKLT VAAHRLKLSP HGRAQVMRAL RQSAPALAPQ PPPLLPADEF
101: SLDAIILLQR SMLEKQWQLP FEEEDDDDGG GDGHHVEAIG SAEDDDGKGR SSSVVVARSG VSARQRRMSG RRRGRSKKGS GAVHLSISPE LLQSRNRIYL
201: RGTVSKELLT HKQVVHLSKK IKDGIWLQQQ RSKLKEKLGN EPSYKQMAQS LRISTPELRS RMRESFLARE VLTMSNIRLV ISIAQKYDKL GVELSDLIQG
301: GLIGLLRGIE KFDASRGFRI STYVYWWIRQ GVSRALADNS KTFRLPTYLH ERLIAIRGAK YALEDQGVSP TTQNIAKLLN ISEKKVHNAT EAVNKALSLD
401: QQAFPSLNGL PGDTLHSYIE DQNVANDPWH GFEEWYLKEE VNKLLNSNLT ERERDIIQLY HGIGKQCHTW EDISRQFGLS RERVRQVGLI AMEKLKHAAR
501: RKKLDALLQD Y

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.