Factsheet for AT1G64860.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52962	Canola	nucleus	85.06	88.96
CDY56127	Canola	nucleus	85.86	87.78
Bra008513.1-P	Field mustard	nucleus	85.66	87.4
KRH39837	Soybean	plastid	70.72	70.58
KRH23963	Soybean	plastid	70.52	70.38
Solyc03g097320.2.1	Tomato	nucleus, plastid	66.33	65.42
PGSC0003DMT400069555	Potato	nucleus	65.54	65.15
Solyc06g072710.2.1	Tomato	nucleus	64.94	64.55
GSMUA_Achr1P10700_001	Banana	nucleus	53.78	63.83
HORVU7Hr1G069520.2	Barley	nucleus	36.65	61.33
GSMUA_Achr11P...	Banana	nucleus	55.58	60.78
VIT_16s0039g00660.t01	Wine grape	plastid	68.73	59.69
Os08t0163400-01	Rice	nucleus	46.41	55.88
EES13412	Sorghum	plastid	51.99	52.2
Zm00001d049494_P001	Maize	plastid	51.39	51.19
Zm00001d024507_P001	Maize	plastid	45.22	50.44
TraesCS7D01G292000.1	Wheat	plastid	50.4	49.51
TraesCS7A01G297900.2	Wheat	plastid	50.0	49.22
TraesCS7B01G184800.1	Wheat	nucleus, plastid	50.0	49.12
PGSC0003DMT400068109	Potato	nucleus	58.96	48.52
AT5G13730.1	Thale cress	plastid	21.51	25.78
AT1G08540.1	Thale cress	plastid	24.9	21.85
AT2G36990.1	Thale cress	plastid	23.31	21.39
AT5G24120.3	Thale cress	nucleus	21.12	20.5
AT3G53920.1	Thale cress	plastid	17.13	15.06

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	EntrezGene:842794	ProteinID:AAD38260.1	EMBL:AB004821
ProteinID:AEE34298.1	ProteinID:AEE34299.1	EMBL:AF015542	EMBL:AF024590	EMBL:AF325036	EMBL:AK316773
ArrayExpress:AT1G64860	EnsemblPlantsGene:AT1G64860	RefSeq:AT1G64860	TAIR:AT1G64860	RefSeq:AT1G64860-TAIR-G	EnsemblPlants:AT1G64860.1
TAIR:AT1G64860.1	EMBL:AY062526	EMBL:AY093306	Unigene:At.25556	ProteinID:BAA82448.1	EMBL:D89993
GO:GO:0001053	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987	GO:GO:0015979	GO:GO:0016043
GO:GO:0016987	GO:GO:0071461	GO:GO:0071482	GO:GO:0080005	GO:GO:2000142	GO:GO:2001141
InterPro:IPR036388	RefSeq:NP_001319322.1	RefSeq:NP_176666.1	UniProt:O24629	PFAM:PF04539	PFAM:PF04542
PFAM:PF04545	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603	PANTHER:PTHR30603:SF14
InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2
InterPro:RNA_pol_sigma_r3/r4-like	Symbol:SIGA	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI00000483F3
InterPro:WH-like_DNA-bd_sf	EMBL:Y14252	EMBL:Y14567	SEG:seg	:	:

Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]

Coordinates

chr1:+:24097736..24100970

Molecular Weight (calculated)

56402.9 Da

IEP (calculated)

10.050

GRAVY (calculated)

-0.457

Length

502 amino acids

Sequence
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.