Factsheet for Os08t0242800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0225100-01
Os02t0704600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36990.1	Os02t0704600-01	AT3G50910.1	21798944
AT2G36990.1	Os01t0225100-01	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G563800.2	Wheat	plastid	73.08	74.25
KXG37075	Sorghum	plastid	72.03	74.23
TraesCS5D01G551200.1	Wheat	plastid	72.2	73.88
HORVU5Hr1G125110.10	Barley	plastid	70.8	73.24
TraesCS4A01G315700.3	Wheat	plastid	72.2	72.97
Zm00001d012810_P003	Maize	plastid	51.57	68.93
GSMUA_Achr4P30300_001	Banana	nucleus	20.28	57.71
CDY66142	Canola	nucleus	30.24	51.18
CDX79708	Canola	endoplasmic reticulum, extracellular	11.01	42.28
Bra017213.1-P	Field mustard	plastid	38.81	41.65
CDY18468	Canola	plastid	39.16	41.18
GSMUA_Achr11P...	Banana	nucleus	41.61	41.11
AT2G36990.1	Thale cress	plastid	38.99	40.77
VIT_08s0040g01560.t01	Wine grape	plastid	38.46	39.22
Solyc09g008040.2.1	Tomato	nucleus, plastid	38.29	38.9
KRG96007	Soybean	nucleus	36.71	37.91
KRH67719	Soybean	nucleus	36.54	37.73
PGSC0003DMT400055506	Potato	nucleus, plastid	38.11	37.46
KRH19920	Soybean	plastid	37.41	37.28
KRH32532	Soybean	nucleus, plastid	37.24	37.04
Os11t0448400-02	Rice	nucleus	22.2	30.02
Os03t0271100-01	Rice	mitochondrion	25.17	26.67
Os08t0163400-01	Rice	nucleus	19.23	26.38
Os05t0586600-01	Rice	plastid	11.89	19.15
Os05t0589200-01	Rice	plasma membrane	15.21	18.75

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	EntrezGene:4345044	EMBL:AB096012	EMBL:AK099922
ProteinID:BAD05586.1	ProteinID:BAD05631.1	ProteinID:BAF23257.1	ProteinID:BAT04508.1	GO:GO:0001053	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:0045893
GO:GO:0071482	GO:GO:0071483	GO:GO:0090351	GO:GO:2000142	InterPro:IPR036388	EnsemblPlantsGene:Os08g0242800
EnsemblPlants:Os08t0242800-01	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046
PANTHER:PTHR30603	PANTHER:PTHR30603:SF9	UniProt:Q84LK8	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000019A394	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_015650731.1	SEG:seg

Description

SIGMA FACTOR 6Similar to Sigma factor SIG6. (Os08t0242800-01);Similar to Sigma factor SIG6. (Os08t0242800-02)

Coordinates

chr8:+:8677955..8681460

Molecular Weight (calculated)

64233.5 Da

IEP (calculated)

9.094

GRAVY (calculated)

-0.566

Length

572 amino acids

Sequence
(BLAST)

001: MNSGGRSLLS SPLFASSSPA FRGGAAAASC SSSSSPSSSS RATVVPMVHD TGGGRASSTA CHYSPSLVAA EPEEHVHGRS KDDDDDAAVS LMGEKALLEL
101: LLDMALEQHA PGKKLPAEER EESEFDIYLR DDKSHVLYHP EFSSTSVSSS PLSVKSSERS DLGTASAVLT KDVALLAEET DILATQLKAS QLYSVDSSKS
201: NEELQSKGQV FVRSTRLLER RSKRRYAPRA SIADVSCSAD NSKKKEKSKK YGRVLEPDEP FKLFLRDRET TEFLTAKEER HLFSKIQILM KIEEAHRKLE
301: VQCGREPTLA EWAEAVGMSS KELQSSIRTG RRCREKMARS NFRLVIHVAR KYEGYGLDIQ DLVQDGCSGL MKTFEKFNPS KGCRFPTYAY WWIRQSIKKS
401: IFKNSRLIRL PESVYALLRK VGKARMECIM EGEQPTNANV ARRAGITIEK LAKLRAKTRK PRSMQDHVWS DEGVTFQEIT EDPNVEPPDL SVDRMMMRQQ
501: VRDFLGILSP REKEIIEHRF GIHDGEPKTL HVIGDMFGLS KERIRQLQNR ALEKLKRSAS LQGFDVYFDL LT

Best Arabidopsis Sequence Match ( AT2G36990.1 )
(BLAST)

001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV

Arabidopsis Description

SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.