Factsheet for Os01t0225100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1
plasma membrane 2
mitochondrion 1
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0201200-01
Os01t0663300-01
Os01t0747400-01
Os03t0339100-01
Os03t0632800-01
Os03t0741700-00
Os03t0796501-00
Os04t0165200-01
Os05t0519200-02
Os07t0180900-01
Os08t0562300-01
Os09t0513700-01
Os12t0600200-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58720.1	Os03t0632800-01	AT2G30580.1	21798944
AT5G58720.1	Os03t0741700-00	AT2G30580.1	21798944
AT5G58720.1	Os12t0600200-03	AT2G30580.1	21798944
AT5G58720.1	Os09t0513700-01	AT2G43370.1	21798944
AT5G58720.1	Os03t0796501-00	AT3G09630.1	21798944
AT5G58720.1	Os07t0180900-01	AT3G09630.1	21798944
AT5G58720.1	Os03t0339100-01	AT4G15900.1	10220464
AT5G58720.1	Os04t0165200-01	AT5G22890.1	21798944
AT5G58720.1	Os08t0562300-01	AT5G22890.1	21798944
AT5G58720.1	Os01t0201200-01	AT5G58950.1	21798944
AT5G58720.1	Os01t0747400-01	AT5G58950.1	21798944
AT5G58720.1	Os05t0519200-02	AT5G58950.1	21798944
AT5G58720.1	Os01t0663300-01	AT5G66460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G177300.1	Wheat	plastid	55.67	29.13
OQU86087	Sorghum	nucleus	56.74	26.94
TraesCS3A01G150300.2	Wheat	plastid	54.96	26.27
TraesCS3D01G158200.1	Wheat	plastid	54.26	25.93
Zm00001d039321_P008	Maize	nucleus	54.96	23.7
HORVU3Hr1G030600.8	Barley	mitochondrion	56.38	23.11
GSMUA_Achr7P14320_001	Banana	nucleus	29.08	18.98
Bra006747.1-P	Field mustard	nucleus	22.34	12.68
CDY61025	Canola	nucleus	22.34	12.68
VIT_06s0004g06590.t01	Wine grape	nucleus	21.63	12.47
AT5G58720.1	Thale cress	nucleus	22.7	12.33
Bra020357.1-P	Field mustard	nucleus	22.7	12.24
CDY32688	Canola	nucleus	21.28	11.79
KRG98291	Soybean	nucleus	20.92	11.59
CDX71154	Canola	nucleus	18.09	11.59
CDY02832	Canola	nucleus	21.28	11.49
Solyc06g007110.2.1	Tomato	nucleus	20.21	11.2
PGSC0003DMT400010646	Potato	nucleus	19.86	11.02
KRH30312	Soybean	nucleus	19.15	10.55
Os02t0639700-01	Rice	nucleus	16.31	9.43
Zm00001d017254_P002	Maize	cytosol	1.42	2.58
GSMUA_Achr7P14310_001	Banana	endoplasmic reticulum, golgi	0.71	2.15

Protein Annotations

EnsemblPlants:Os01t0225100-01	EnsemblPlantsGene:Os01g0225100	PANTHER:PTHR13308	PANTHER:PTHR13308:SF22	ProteinID:BAS71107.1	SEG:seg
UniParc:UPI0003938A1C	UniProt:A0A0P0UZU1	MapMan:35.2	:	:	:

Description

Conserved hypothetical protein. (Os01t0225100-01)

Coordinates

chr1:+:6889444..6896387

Molecular Weight (calculated)

28562.3 Da

IEP (calculated)

9.665

GRAVY (calculated)

-0.404

Length

282 amino acids

Sequence
(BLAST)

001: MRPSKKKSKK KKPSPAAAAG AAAPTTPPAA ADGGAGGESC SPRSETLTLA AAAAAAAVAS ETESSSSCEA STCSSSSSAF NPGSSGAAST SSLSAFSSSA
101: STASSSAAGD ERRDMAWLLD AFGTATIDQV DSAYREAGGD AFLAAGILGS SPETQPSPPP RPPDLSPRAG SGGRKASRRP KKVAVAATGM VADVIGKAYT
201: RPATSPVNKT NAWKGNAWKD GSGGDRKYSV EEAEQFLCSM LGDNSELGMG VVRDVLGKLL LPNKRTCKKM HFFYRCKSPA EL

Best Arabidopsis Sequence Match ( AT5G58720.2 )
(BLAST)

001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPCEYLANS IISLFFFSRS S

Arabidopsis Description

PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.