Factsheet for Os07t0180900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

plastid 3
cytosol 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 18260611
plasma membrane: 19502382
nucleus: 19621931
plastid: 21433289
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0196500-01
Os01t0225100-01
Os02t0506100-00
Os04t0382800-00
Os05t0200280-01
Os05t0550000-00
Os07t0181000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	Os05t0550000-00	AT1G17970.1	21798944
AT3G09630.1	Os01t0196500-01	AT3G13720.1	21798944
AT3G09630.1	Os05t0200280-01	AT3G13720.1	21798944
AT3G09630.1	Os07t0181000-01	AT3G22960.1	21798944
AT5G02870.1	Os02t0506100-00	AT5G22310.1	21798944
AT5G02870.1	Os04t0382800-00	AT5G22310.1	21798944
AT5G02870.1	Os01t0225100-01	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007824_P001	Maize	plasma membrane	90.86	91.09
KXG34535	Sorghum	cytosol	90.37	90.59
TraesCS2A01G253600.1	Wheat	cytosol	88.89	89.33
Zm00001d018957_P001	Maize	plasma membrane	88.64	89.08
Os03t0796501-00	Rice	nucleus	84.69	84.9
GSMUA_Achr7P01370_001	Banana	cytosol	12.35	79.37
GSMUA_Achr5P03060_001	Banana	cytosol	77.53	77.34
GSMUA_Achr4P21120_001	Banana	cytosol	76.54	76.35
GSMUA_Achr4P28500_001	Banana	cytosol	20.49	74.11
GSMUA_Achr4P28490_001	Banana	nucleus	11.36	73.02
AT3G09630.1	Thale cress	cytosol	72.1	71.92
Bra009560.1-P	Field mustard	cytosol	71.85	71.67
PGSC0003DMT400028707	Potato	cytosol	69.14	71.61
CDX70339	Canola	cytosol	71.6	71.43
Solyc09g007250.2.1	Tomato	nucleus	71.6	71.43
CDY41596	Canola	cytosol	71.6	71.43
CDY44721	Canola	cytosol, extracellular	71.6	71.43
CDY10418	Canola	cytosol	71.6	71.25
PGSC0003DMT400071725	Potato	cytosol	71.36	71.18
AT5G02870.1	Thale cress	cytosol	71.11	70.76
Bra005749.1-P	Field mustard	cytosol	70.86	70.69
CDX80842	Canola	cytosol	70.62	70.44
Bra029780.1-P	Field mustard	cytosol	70.37	70.2
CDX73989	Canola	cytosol	70.37	70.2
CDY41301	Canola	cytosol	67.65	70.08
CDY22192	Canola	cytosol	67.65	70.08
PGSC0003DMT400045381	Potato	cytosol	70.37	70.02
Bra001302.1-P	Field mustard	cytosol	70.12	69.95
CDY11231	Canola	cytosol	67.41	69.64
Solyc10g084350.1.1	Tomato	nucleus	35.31	69.42
Bra034075.1-P	Field mustard	cytosol	63.46	66.07
Solyc10g086010.1.1	Tomato	extracellular	70.37	65.52
GSMUA_Achr2P12650_001	Banana	plastid	49.88	50.37
VIT_02s0087g00870.t01	Wine grape	cytosol	12.1	39.84
Bra006658.1-P	Field mustard	plastid	9.38	38.38
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	68.15	35.43
KRG89783	Soybean	plastid	3.95	16.67

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	EntrezGene:4342563	EMBL:AK060711	EMBL:AK060963	EMBL:AK104447
EMBL:AK104504	EMBL:AK104629	ProteinID:BAC83047.1	ProteinID:BAT00317.1	ProteinID:EAZ38906.1	GO:GO:0002181
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	InterPro:IPR023574	EnsemblPlantsGene:Os07g0180900	EnsemblPlants:Os07t0180900-01	PFAM:PF00573	PFAM:PF14374
ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	UniProt:Q6ZLB8	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e
InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI00001BF1B0	RefSeq:XP_015647011.1	SEG:seg

Description

Similar to 60S ribosomal protein L4. (Os07t0180900-01)

Coordinates

chr7:+:4263172..4265561

Molecular Weight (calculated)

44741.4 Da

IEP (calculated)

11.226

GRAVY (calculated)

-0.422

Length

405 amino acids

Sequence
(BLAST)

001: MATQTRPLVS VKALEGDMAT DNSSSLALAE VFRAPLRPDV VRFVHRLLSC NKRQPYAVSR RAGHQTSAES WGTGRAVSRI PRVPGGGTHR AGQGAFGNMC
101: RGGRMFAPTK TWRKWHRRVN VHLRRVAVAS ALAATSVPSL VLARGHRIET VPELPLVISD SAESIEKTSQ AIKILKQVGA YADAEKAKDS VGIRPGKGKM
201: RNRRYINRKG PLIVYGTEGS KIVKAFRNLP GVDVANVERL NLLDLAPGGH LGRFVIWTES AFKKLEEVYG TFEAPSLKKK GFILPRPKMA NADLGRIINS
301: DEVQSVVKPL NKEVKRREKR KNPLKNVAAV LKLNPYFGTA RKMATLAEAA RIKARKEKLD SKRTKLSPEE AAKVKAAGKA WYKTMISDSD YAEFDNFSKW
401: LGVTQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.