Factsheet for Bra034075.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001896.1-P
Bra016574.1-P
Bra021502.1-P
Bra021503.1-P
Bra023780.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	Bra016574.1-P	AT1G17970.1	21798944
AT3G09630.1	Bra021502.1-P	AT3G13720.1	21798944
AT3G09630.1	Bra021503.1-P	AT3G13720.1	21798944
AT3G09630.1	Bra001896.1-P	AT3G22960.1	21798944
AT3G09630.1	Bra023780.1-P	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22192	Canola	cytosol	94.6	94.12
CDY41301	Canola	cytosol	94.34	93.86
Bra009560.1-P	Field mustard	cytosol	92.03	88.18
Bra005749.1-P	Field mustard	cytosol	91.26	87.44
AT3G09630.1	Thale cress	cytosol	90.49	86.7
Bra029780.1-P	Field mustard	cytosol	89.97	86.21
Bra001302.1-P	Field mustard	cytosol	89.46	85.71
Solyc10g084350.1.1	Tomato	nucleus	43.19	81.55
GSMUA_Achr4P28490_001	Banana	nucleus	12.34	76.19
KRH19796	Soybean	nucleus	78.66	75.56
KRH32387	Soybean	nucleus	77.64	74.57
GSMUA_Achr7P01370_001	Banana	cytosol	11.83	73.02
PGSC0003DMT400045381	Potato	cytosol	74.81	71.5
PGSC0003DMT400028707	Potato	cytosol	71.47	71.1
GSMUA_Achr4P21120_001	Banana	cytosol	74.04	70.94
PGSC0003DMT400071725	Potato	cytosol	74.04	70.94
Solyc09g007250.2.1	Tomato	nucleus	74.04	70.94
GSMUA_Achr5P03060_001	Banana	cytosol	73.52	70.44
Solyc10g086010.1.1	Tomato	extracellular	74.81	66.9
KRG95915	Soybean	endoplasmic reticulum	73.52	66.51
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	67.87	66.5
TraesCS1D01G264200.1	Wheat	cytosol	68.64	66.09
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	68.38	65.84
TraesCS5A01G439100.2	Wheat	cytosol, unclear	68.38	65.84
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	68.38	65.84
TraesCS5D01G446300.2	Wheat	cytosol	68.12	65.59
Zm00001d007824_P001	Maize	plasma membrane	67.61	65.1
Zm00001d013076_P001	Maize	plasma membrane	67.61	65.1
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	67.87	64.71
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	66.84	64.36
KXG34535	Sorghum	cytosol	66.58	64.11
EER90739	Sorghum	cytosol, plastid	66.58	64.11
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	66.32	63.86
Zm00001d018957_P001	Maize	plasma membrane	65.81	63.52
Os07t0180900-01	Rice	nucleus, plasma membrane	66.07	63.46
HORVU4Hr1G075710.1	Barley	mitochondrion	67.1	61.56
TraesCS2A01G253600.1	Wheat	cytosol	63.75	61.54
Os03t0796501-00	Rice	nucleus	63.5	61.14
GSMUA_Achr4P28500_001	Banana	cytosol	17.48	60.71
Bra006658.1-P	Field mustard	plastid	15.17	59.6
VIT_15s0045g00110.t01	Wine grape	cytosol	31.36	55.71
KRG96019	Soybean	endoplasmic reticulum, extracellular	12.85	55.56
GSMUA_Achr2P12650_001	Banana	plastid	51.16	49.63
VIT_00s0208g00020.t01	Wine grape	cytosol	30.59	30.67

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	EnsemblPlantsGene:Bra034075	EnsemblPlants:Bra034075.1	EnsemblPlants:Bra034075.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574	UniProt:M4EZ32	PFAM:PF00573	PFAM:PF14374
ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS
InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI000254438B	SEG:seg	:	:

Description

AT3G09630 (E=1e-140) | 60S ribosomal protein L4/L1 (RPL4A)

Coordinates

chrA01:-:27565866..27567749

Molecular Weight (calculated)

42635.0 Da

IEP (calculated)

10.871

GRAVY (calculated)

-0.367

Length

389 amino acids

Sequence
(BLAST)

001: MAAAAARPLV TVQGLDGDMT TDQSTTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSH LAPLAPPRQR QHETARGRGP
101: RRVNVNMKRH AIVSAIAATA VPALVMARGH KIENVPEMPL VVSDSAEAVE KTAAAIKVLK QVGAYDDAEK AKDSIGIRSG VGKMRNRRYI SRKGPLVVYG
201: TEGAKIVKAF RNITGVELCH VERLNLLKLA PGGHLGRFVI WTKSAFEKLE GIYGSFEKPS EKKKGYVLPR AKIVNADLAR IINSDEVQSV VKPIKKDAKR
301: AVMKKNPLKN LNVMLKLNPY AKTAKRMSLL AEAQRVKAKK EKLTKKRKTV TKEEALAIKA AGKSWYQTMV SDSDYTEFDN FTKWLGASQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.