Factsheet for Zm00001d034440_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d003996_P001
Zm00001d011636_P001
Zm00001d017254_P002
Zm00001d018961_P002
Zm00001d025208_P002
Zm00001d034443_P001
Zm00001d037747_P001
Zm00001d038909_P001
Zm00001d039321_P008
Zm00001d039455_P002
Zm00001d043784_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	Zm00001d011636_P001	AT1G17970.1	21798944
AT3G09630.1	Zm00001d038909_P001	AT1G17970.1	21798944
AT3G09630.1	Zm00001d043784_P002	AT1G17970.1	21798944
AT3G09630.1	Zm00001d037747_P001	AT3G13720.1	21798944
AT3G09630.1	Zm00001d039455_P002	AT3G13720.1	21798944
AT3G09630.1	Zm00001d018961_P002	AT3G22960.1	21798944
AT3G09630.1	Zm00001d034443_P001	AT3G22960.1	21798944
AT5G02870.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT5G02870.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT5G02870.1	Zm00001d025208_P002	AT5G22310.1	21798944
AT5G02870.1	Zm00001d017254_P002	AT5G58720.1	21798944
AT5G02870.1	Zm00001d039321_P008	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013076_P001	Maize	plasma membrane	95.05	95.05
EER90739	Sorghum	cytosol, plastid	94.55	94.55
Os03t0796501-00	Rice	nucleus	88.61	88.61
Zm00001d007824_P001	Maize	plasma membrane	87.87	87.87
Zm00001d018957_P001	Maize	plasma membrane	86.63	86.85
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	85.64	85.64
TraesCS1D01G264200.1	Wheat	cytosol	85.64	85.64
TraesCS5D01G446300.2	Wheat	cytosol	85.4	85.4
TraesCS5A01G439100.2	Wheat	cytosol, unclear	85.4	85.4
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	85.4	85.4
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	84.65	84.65
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	85.4	84.56
HORVU4Hr1G075710.1	Barley	mitochondrion	85.4	81.37
GSMUA_Achr4P28500_001	Banana	cytosol	22.28	80.36
GSMUA_Achr5P03060_001	Banana	cytosol	78.47	78.08
GSMUA_Achr4P21120_001	Banana	cytosol	77.23	76.85
PGSC0003DMT400028707	Potato	cytosol	70.54	72.89
Bra009560.1-P	Field mustard	cytosol	72.52	72.17
AT3G09630.1	Thale cress	cytosol	72.52	72.17
CDX70339	Canola	cytosol	72.28	71.92
CDY10418	Canola	cytosol	72.28	71.74
Solyc09g007250.2.1	Tomato	nucleus	72.03	71.67
CDY41596	Canola	cytosol	71.78	71.43
CDY44721	Canola	cytosol, extracellular	71.78	71.43
GSMUA_Achr7P01370_001	Banana	cytosol	11.14	71.43
PGSC0003DMT400071725	Potato	cytosol	71.78	71.43
CDX80842	Canola	cytosol	71.78	71.43
Solyc10g084350.1.1	Tomato	nucleus	36.39	71.36
AT5G02870.1	Thale cress	cytosol	71.78	71.25
Bra005749.1-P	Field mustard	cytosol	71.53	71.18
CDY41301	Canola	cytosol	68.56	70.84
CDY22192	Canola	cytosol	68.56	70.84
PGSC0003DMT400045381	Potato	cytosol	71.04	70.52
Bra029780.1-P	Field mustard	cytosol	70.79	70.44
CDY11231	Canola	cytosol	68.07	70.15
GSMUA_Achr4P28490_001	Banana	nucleus	10.89	69.84
CDX73989	Canola	cytosol	70.05	69.7
Bra001302.1-P	Field mustard	cytosol	69.8	69.46
Bra034075.1-P	Field mustard	cytosol	63.86	66.32
Solyc10g086010.1.1	Tomato	extracellular	71.04	65.98
GSMUA_Achr2P12650_001	Banana	plastid	50.99	51.37
Bra006658.1-P	Field mustard	plastid	9.65	39.39
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	68.32	35.43
VIT_02s0087g00870.t01	Wine grape	cytosol	10.64	34.96
KRG89783	Soybean	plastid	4.21	17.71

Protein Annotations

EntrezGene:100191314	MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	UniProt:B4F8D2	EMBL:BT033370	EMBL:BT054461
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574	ProteinID:ONM10261.1	PFAM:PF00573	PFAM:PF14374
ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS
InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI00017B63A4	EnsemblPlantsGene:Zm00001d034440	EnsemblPlants:Zm00001d034440_P001	EnsemblPlants:Zm00001d034440_T001
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L4-1

Coordinates

chr1:-:293008179..293011116

Molecular Weight (calculated)

44453.2 Da

IEP (calculated)

11.232

GRAVY (calculated)

-0.374

Length

404 amino acids

Sequence
(BLAST)

001: MAAGARPLVS VRALEGDMAT DSVGVPLPDV LRAPIRPDIV RFVHKLLSCN SRQPYAVSRR AGHQTSAESW GTGRAVSRIP RVPGGGTHRA GQGAFGNMCR
101: GGRMFAPTKI WRRWHRRVNI HLRRVAIASA LAATAVPSLV LARGHRVEYV PELPLVVSDS AESIEKTAQA IKVLKQLGAS ADADKAKDSV SIRPGKGKMR
201: NRRYINRKGP LIVYGAEGSK IVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTECA FKKLDEVYGT FDTPSAKKKG FLLPRPKMAN ADLSRLINSD
301: EVQSVVKPIN KEVKRREPRK NPLKNMAAVL KLNPYLGTAR KMAALAEAAR VKARKQKLDS KRTKLSPEET SKVKAAGKAW YKTMISDSDY TEFENFTKWL
401: GVTQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.