CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83878
CDX92969
CDX94878
CDX96741
CDY35484
CDY37482
CDY40829
CDY51733
CDY51734
CDY55133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	CDX83878	AT1G17970.1	21798944
AT3G09630.1	CDX96741	AT1G17970.1	21798944
AT3G09630.1	CDY37482	AT3G13720.1	21798944
AT3G09630.1	CDY51733	AT3G13720.1	21798944
AT3G09630.1	CDY51734	AT3G13720.1	21798944
AT3G09630.1	CDY55133	AT3G13720.1	21798944
AT3G09630.1	CDX92969	AT3G22960.1	21798944
AT3G09630.1	CDX94878	AT3G22960.1	21798944
AT3G09630.1	CDY35484	AT3G22960.1	21798944
AT3G09630.1	CDY40829	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001302.1-P	Field mustard	cytosol	99.75	99.75
CDY41596	Canola	cytosol	93.84	93.84
CDY44721	Canola	cytosol, extracellular	93.84	93.84
CDY22192	Canola	cytosol	89.9	93.35
CDY41301	Canola	cytosol	89.66	93.09
AT3G09630.1	Thale cress	cytosol	92.36	92.36
CDX70339	Canola	cytosol	91.63	91.63
CDX80842	Canola	cytosol	91.38	91.38
CDY11231	Canola	cytosol	88.18	91.33
CDY10418	Canola	cytosol	91.38	91.15
Solyc10g084350.1.1	Tomato	nucleus	40.89	80.58
KRH19796	Soybean	nucleus	79.8	80.0
KRH32387	Soybean	nucleus	79.56	79.75
PGSC0003DMT400028707	Potato	cytosol	75.12	78.01
PGSC0003DMT400045381	Potato	cytosol	77.83	77.64
Solyc09g007250.2.1	Tomato	nucleus	77.09	77.09
PGSC0003DMT400071725	Potato	cytosol	77.09	77.09
GSMUA_Achr4P21120_001	Banana	cytosol	76.11	76.11
GSMUA_Achr5P03060_001	Banana	cytosol	75.86	75.86
GSMUA_Achr4P28500_001	Banana	cytosol	20.2	73.21
GSMUA_Achr4P28490_001	Banana	nucleus	11.33	73.02
GSMUA_Achr7P01370_001	Banana	cytosol	11.33	73.02
Solyc10g086010.1.1	Tomato	extracellular	77.83	72.64
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	72.17	72.52
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	72.17	72.52
TraesCS5A01G439100.2	Wheat	cytosol, unclear	71.92	72.28
TraesCS1D01G264200.1	Wheat	cytosol	71.92	72.28
TraesCS5D01G446300.2	Wheat	cytosol	71.67	72.03
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	69.95	71.54
Zm00001d007824_P001	Maize	plasma membrane	71.18	71.53
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	71.67	71.32
KXG34535	Sorghum	cytosol	70.69	71.04
EER90739	Sorghum	cytosol, plastid	70.69	71.04
KRG95915	Soybean	endoplasmic reticulum	75.12	70.93
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	70.44	70.79
Zm00001d013076_P001	Maize	plasma membrane	70.44	70.79
Os07t0180900-01	Rice	nucleus, plasma membrane	70.2	70.37
Zm00001d018957_P001	Maize	plasma membrane	69.7	70.22
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	69.7	70.05
HORVU4Hr1G075710.1	Barley	mitochondrion	71.43	68.4
TraesCS2A01G253600.1	Wheat	cytosol	67.73	68.24
Os03t0796501-00	Rice	nucleus	67.24	67.57
KRG96019	Soybean	endoplasmic reticulum, extracellular	12.32	55.56
VIT_15s0045g00110.t01	Wine grape	cytosol	29.31	54.34
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	97.29	50.71
GSMUA_Achr2P12650_001	Banana	plastid	48.77	49.38
VIT_00s0208g00020.t01	Wine grape	cytosol	28.57	29.9

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	GO:A0A078CCQ5	EnsemblPlants:CDX73989	ProteinID:CDX73989	ProteinID:CDX73989.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00111722001	InterPro:IPR023574	PFAM:PF00573
PFAM:PF14374	ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e
InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI0004EE8702	SEG:seg	:

Description

BnaA03g30580D

Coordinates

chrLK031800:+:822658..824642

Molecular Weight (calculated)

44540.2 Da

IEP (calculated)

10.875

GRAVY (calculated)

-0.365

Length

406 amino acids

Sequence
(BLAST)

001: MATAAARPLV TVQGLDNDMT TDQSPTVVLP NVMTAPVRPD IVSFVHAQIS NNSRQPYAVS TKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNQ
101: CRGGRMFAPT KVYRLWHRRV NVNMKRHAIV SAIAATAVPA LVVARGHKIE NVPELPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKE SIGIRSGVGK
201: MRNRRYVSRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVVWTK SAFEKLEGIY GSFEKGSEKK KGYVLPRAKM VNADLARIIN
301: SDEVQSVVKP VEKDAKRKVM KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA ERVKAKKEKL TKKRKTVTKE EALAIKAAGK SWYQTMISDS DYTEFDNFTK
401: WLGASQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.