Factsheet for PGSC0003DMT400071725

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400006409
PGSC0003DMT400010646
PGSC0003DMT400014732
PGSC0003DMT400015076
PGSC0003DMT400067737
PGSC0003DMT400069515
PGSC0003DMT400078539

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	PGSC0003DMT400014732	AT1G17970.1	21798944
AT3G09630.1	PGSC0003DMT400078539	AT1G17970.1	21798944
AT3G09630.1	PGSC0003DMT400006409	AT3G13720.1	21798944
AT5G02870.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT5G02870.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT5G02870.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT5G02870.1	PGSC0003DMT400069515	AT3G49580.1	21798944
AT5G02870.1	PGSC0003DMT400015076	AT5G22310.1	21798944
AT5G02870.1	PGSC0003DMT400067737	AT5G22310.1	21798944
AT5G02870.1	PGSC0003DMT400010646	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007250.2.1	Tomato	nucleus	98.28	98.28
PGSC0003DMT400045381	Potato	cytosol	92.86	92.63
PGSC0003DMT400028707	Potato	cytosol	86.7	90.03
KRH32387	Soybean	nucleus	82.51	82.72
KRH19796	Soybean	nucleus	82.51	82.72
GSMUA_Achr4P21120_001	Banana	cytosol	81.77	81.77
GSMUA_Achr5P03060_001	Banana	cytosol	80.79	80.79
AT3G09630.1	Thale cress	cytosol	79.06	79.06
Bra009560.1-P	Field mustard	cytosol	78.57	78.57
CDX70339	Canola	cytosol	78.33	78.33
CDY41301	Canola	cytosol	75.37	78.26
CDY22192	Canola	cytosol	75.37	78.26
CDY10418	Canola	cytosol	78.08	77.89
Bra005749.1-P	Field mustard	cytosol	77.83	77.83
GSMUA_Achr7P01370_001	Banana	cytosol	12.07	77.78
AT5G02870.1	Thale cress	cytosol	77.83	77.64
CDY44721	Canola	cytosol, extracellular	77.59	77.59
CDX80842	Canola	cytosol	77.59	77.59
CDY41596	Canola	cytosol	77.34	77.34
CDY11231	Canola	cytosol	74.63	77.3
CDX73989	Canola	cytosol	77.09	77.09
Bra029780.1-P	Field mustard	cytosol	76.85	76.85
Bra001302.1-P	Field mustard	cytosol	76.85	76.85
GSMUA_Achr4P28490_001	Banana	nucleus	11.82	76.19
GSMUA_Achr4P28500_001	Banana	cytosol	20.94	75.89
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	73.65	75.31
KRG95915	Soybean	endoplasmic reticulum	79.31	74.88
Bra034075.1-P	Field mustard	cytosol	70.94	74.04
Zm00001d013076_P001	Maize	plasma membrane	71.67	72.03
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	71.43	71.78
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	71.43	71.78
TraesCS1D01G264200.1	Wheat	cytosol	71.18	71.53
Os07t0180900-01	Rice	nucleus, plasma membrane	71.18	71.36
KXG34535	Sorghum	cytosol	70.94	71.29
TraesCS5A01G439100.2	Wheat	cytosol, unclear	70.94	71.29
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	70.94	71.29
Os03t0796501-00	Rice	nucleus	70.69	71.04
TraesCS5D01G446300.2	Wheat	cytosol	70.69	71.04
EER90739	Sorghum	cytosol, plastid	70.44	70.79
Zm00001d007824_P001	Maize	plasma membrane	70.2	70.54
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	69.7	70.05
Zm00001d018957_P001	Maize	plasma membrane	69.46	69.98
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	69.95	69.61
TraesCS2A01G253600.1	Wheat	cytosol	66.75	67.25
HORVU4Hr1G075710.1	Barley	mitochondrion	69.95	66.98
KRG96019	Soybean	endoplasmic reticulum, extracellular	13.79	62.22
VIT_15s0045g00110.t01	Wine grape	cytosol	32.02	59.36
Bra006658.1-P	Field mustard	plastid	13.3	54.55
GSMUA_Achr2P12650_001	Banana	plastid	51.72	52.37
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	75.62	39.41
VIT_00s0208g00020.t01	Wine grape	cytosol	30.79	32.22

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	ProteinID:ABB16969	ProteinID:ABB16969.1	ncoils:Coil	EMBL:DQ228320
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574	UniProt:M1CP75	PFAM:PF00573	PFAM:PF14374
EnsemblPlantsGene:PGSC0003DMG400027903	PGSC:PGSC0003DMG400027903	EnsemblPlants:PGSC0003DMT400071725	ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1
InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI0002965556
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L1 [Source:PGSC_GENE;Acc:PGSC0003DMG400027903]

Coordinates

chr9:-:6674653..6677245

Molecular Weight (calculated)

44899.7 Da

IEP (calculated)

10.994

GRAVY (calculated)

-0.443

Length

406 amino acids

Sequence
(BLAST)

001: MATAAAIPTT TVQSLENDMA TDSAAVPLPA VMKAPIRPDV VTYVHSNISK NARQPYAVSR KAGHQTSAES WGTGRAVSRI PRVPGGGTHR AGQGAFGNMC
101: RGGRMFAPTQ IWRRWHRKIP VNQKRYAVAS AIAASSVPSL VLARGHRIES VPELPLVISD SIEGIEKTSN AIKALKQIGA YPDAEKAKDS HAIRQGKGKM
201: RNRRYISRKG PLIVYGTEGA KLVKAFRNIP GVEICHVDRL NLLKLAPGGH LGRFIIWTKC AYEKLDGIYG TFDKPSLKKK GYLLPRPKMV NADLARIINS
301: DEVQSVVRPI KKDVNKRATL KKNPLKNLNV LLKLNPYAKT ARRMSLLAEA QRVKAKKEKL DKKRHQITKE EASAIRGASH SWYKTMISDS DYAEFDNFTK
401: WLGVSQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.