Factsheet for VIT_15s0045g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0179g00350.t01
VIT_01s0011g04080.t01
VIT_05s0020g04480.t01
VIT_06s0004g06590.t01
VIT_06s0080g00930.t01
VIT_09s0002g02400.t01
VIT_16s0098g00600.t01
VIT_17s0000g03210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	VIT_01s0011g04080.t01	AT1G17970.1	21798944
AT3G09630.1	VIT_17s0000g03210.t01	AT1G17970.1	21798944
AT3G09630.1	VIT_09s0002g02400.t01	AT3G13720.1	21798944
AT3G09630.1	VIT_00s0179g00350.t01	AT3G22960.1	21798944
AT3G09630.1	VIT_05s0020g04480.t01	AT3G22960.1	21798944
AT5G02870.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT5G02870.1	VIT_06s0080g00930.t01	AT5G22310.1	21798944
AT5G02870.1	VIT_06s0004g06590.t01	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g03350.t01	Wine grape	cytosol	59.82	39.82
Solyc10g084350.1.1	Tomato	nucleus	36.99	39.32
VIT_00s0208g00020.t01	Wine grape	cytosol	68.49	38.66
VIT_02s0087g00870.t01	Wine grape	cytosol	21.46	38.21
VIT_08s0040g03200.t01	Wine grape	cytosol	66.21	35.71
VIT_06s0004g00360.t01	Wine grape	cytosol	63.47	34.32
PGSC0003DMT400028707	Potato	cytosol	58.45	32.74
PGSC0003DMT400045381	Potato	cytosol	59.82	32.19
Solyc09g007250.2.1	Tomato	nucleus	59.36	32.02
PGSC0003DMT400071725	Potato	cytosol	59.36	32.02
CDY41301	Canola	cytosol	56.16	31.46
CDY22192	Canola	cytosol	56.16	31.46
Bra034075.1-P	Field mustard	cytosol	55.71	31.36
CDY11231	Canola	cytosol	55.71	31.12
AT3G09630.1	Thale cress	cytosol	57.08	30.79
AT5G02870.1	Thale cress	cytosol	56.16	30.22
Solyc10g086010.1.1	Tomato	extracellular	59.82	30.11
CDX80842	Canola	cytosol	55.71	30.05
CDX70339	Canola	cytosol	55.71	30.05
Bra009560.1-P	Field mustard	cytosol	55.71	30.05
Bra005749.1-P	Field mustard	cytosol	55.71	30.05
CDY10418	Canola	cytosol	55.25	29.73
CDX73989	Canola	cytosol	54.34	29.31
Bra001302.1-P	Field mustard	cytosol	54.34	29.31
CDY41596	Canola	cytosol	53.88	29.06
CDY44721	Canola	cytosol, extracellular	53.88	29.06
Bra029780.1-P	Field mustard	cytosol	52.97	28.57
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	52.97	14.89
Bra006658.1-P	Field mustard	plastid	4.11	9.09
VIT_13s0067g03340.t01	Wine grape	cytosol, mitochondrion	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	ProteinID:CCB60735	ProteinID:CCB60735.1	UniProt:F6I1B9	EMBL:FN596510
GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	InterPro:IPR023574	PFAM:PF00573	PANTHER:PTHR19431	InterPro:Ribosomal_L4/L1e
InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI000210AA92	ArrayExpress:VIT_15s0045g00110	EnsemblPlantsGene:VIT_15s0045g00110	EnsemblPlants:VIT_15s0045g00110.t01

Description

No Description!

Coordinates

chr15:-:4647926..4648587

Molecular Weight (calculated)

24345.3 Da

IEP (calculated)

10.686

GRAVY (calculated)

-0.075

Length

219 amino acids

Sequence
(BLAST)

001: MARDHRIESV PELPLVIGDS AESIEKISAA IDILKQVGAY PDAEKAKDSH AIRPGKGKMR NRRYISRKGP LIVYGMEGAK LVKAFQNIPG VEVANVDRLN
101: LLKLAPGGHL GRFVIWTKSA FKKLDSIYGS FEKKLRRRRM GTCCPVQKWL MLIWLGILNS VPSPLACLNL RPRNQDLGLP IPASMHPTLP GFSLTASPPP
201: KWSFLKITLV LYPIDPFSL

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.