Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_15s0045g00110.t01 | Wine grape | cytosol | 39.82 | 59.82 |
VIT_06s0004g00360.t01 | Wine grape | cytosol | 67.78 | 55.06 |
VIT_08s0040g03200.t01 | Wine grape | cytosol | 65.35 | 52.96 |
VIT_02s0087g00870.t01 | Wine grape | cytosol | 17.02 | 45.53 |
VIT_00s0208g00020.t01 | Wine grape | cytosol | 40.43 | 34.28 |
VIT_13s0067g03340.t01 | Wine grape | cytosol, mitochondrion | 0.0 | 0.0 |
Protein Annotations
MapMan:17.1.2.1.2 | Gene3D:3.40.1370.10 | ProteinID:CCB49766 | ProteinID:CCB49766.1 | ncoils:Coil | UniProt:F6HC63 |
EMBL:FN595514 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | GO:GO:0022625 | InterPro:IPR023574 |
PFAM:PF00573 | PFAM:PF14374 | PANTHER:PTHR19431 | PANTHER:PTHR19431:SF1 | InterPro:Ribos_L4_C_dom | InterPro:Ribosomal_L4/L1e |
InterPro:Ribosomal_L4_dom_sf | SUPFAM:SSF52166 | TMHMM:TMhelix | UniParc:UPI000210A102 | ArrayExpress:VIT_13s0067g03350 | EnsemblPlantsGene:VIT_13s0067g03350 |
EnsemblPlants:VIT_13s0067g03350.t01 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr13:+:1837463..1838505
Molecular Weight (calculated)
36786.7 Da
IEP (calculated)
10.691
GRAVY (calculated)
-0.198
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGHRIESV PELPLVIGDS AESVEKTSAA IDILKQVGAY PDVEKAKDSH GIRPEKGKMR NRRYISRKGP LIVYDTEGAK LVKAFRNIPG VEVANVKRLN
101: LLKLAPGGHL GRFIIWTKSA IEKVDSIYGS FDKTSEKKKG YLLPRAKMVN ADLARIINSD EVQSVVRPIK KEMKRAPMKK NPLKNLNTML KLNPYAKTTR
201: RMALLAEAQR VKAKKEKLDK RKGLKAAAKK AAGENDDAQV ERRVVMEIEV LGLPMMTNMG LSGSSGPSLL MEGLMPITLM AHTHIESTHL AASMLSNCQA
301: SHFRNLFIYL SIFIFHFILF YLILLSHIF
101: LLKLAPGGHL GRFIIWTKSA IEKVDSIYGS FDKTSEKKKG YLLPRAKMVN ADLARIINSD EVQSVVRPIK KEMKRAPMKK NPLKNLNTML KLNPYAKTTR
201: RMALLAEAQR VKAKKEKLDK RKGLKAAAKK AAGENDDAQV ERRVVMEIEV LGLPMMTNMG LSGSSGPSLL MEGLMPITLM AHTHIESTHL AASMLSNCQA
301: SHFRNLFIYL SIFIFHFILF YLILLSHIF
001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE ALAIKAAGKS WYKTMISDSD YTEFDNFTKW
401: LGASQ
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE ALAIKAAGKS WYKTMISDSD YTEFDNFTKW
401: LGASQ
Arabidopsis Description
RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.