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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • plastid 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_15s0045g00110.t01 Wine grape cytosol 39.82 59.82
VIT_06s0004g00360.t01 Wine grape cytosol 67.78 55.06
VIT_08s0040g03200.t01 Wine grape cytosol 65.35 52.96
VIT_02s0087g00870.t01 Wine grape cytosol 17.02 45.53
VIT_00s0208g00020.t01 Wine grape cytosol 40.43 34.28
VIT_13s0067g03340.t01 Wine grape cytosol, mitochondrion 0.0 0.0
Protein Annotations
MapMan:17.1.2.1.2Gene3D:3.40.1370.10ProteinID:CCB49766ProteinID:CCB49766.1ncoils:CoilUniProt:F6HC63
EMBL:FN595514GO:GO:0002181GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003735
GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0019538GO:GO:0022625InterPro:IPR023574
PFAM:PF00573PFAM:PF14374PANTHER:PTHR19431PANTHER:PTHR19431:SF1InterPro:Ribos_L4_C_domInterPro:Ribosomal_L4/L1e
InterPro:Ribosomal_L4_dom_sfSUPFAM:SSF52166TMHMM:TMhelixUniParc:UPI000210A102ArrayExpress:VIT_13s0067g03350EnsemblPlantsGene:VIT_13s0067g03350
EnsemblPlants:VIT_13s0067g03350.t01SEG:seg::::
Description
No Description!
Coordinates
chr13:+:1837463..1838505
Molecular Weight (calculated)
36786.7 Da
IEP (calculated)
10.691
GRAVY (calculated)
-0.198
Length
329 amino acids
Sequence
(BLAST)
001: MARGHRIESV PELPLVIGDS AESVEKTSAA IDILKQVGAY PDVEKAKDSH GIRPEKGKMR NRRYISRKGP LIVYDTEGAK LVKAFRNIPG VEVANVKRLN
101: LLKLAPGGHL GRFIIWTKSA IEKVDSIYGS FDKTSEKKKG YLLPRAKMVN ADLARIINSD EVQSVVRPIK KEMKRAPMKK NPLKNLNTML KLNPYAKTTR
201: RMALLAEAQR VKAKKEKLDK RKGLKAAAKK AAGENDDAQV ERRVVMEIEV LGLPMMTNMG LSGSSGPSLL MEGLMPITLM AHTHIESTHL AASMLSNCQA
301: SHFRNLFIYL SIFIFHFILF YLILLSHIF
Best Arabidopsis Sequence Match ( AT3G09630.2 )
(BLAST)
001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE ALAIKAAGKS WYKTMISDSD YTEFDNFTKW
401: LGASQ
Arabidopsis Description
RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.