Subcellular Localization
min:
: max
Winner_takes_all: cytosol, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g00360.t01 | Wine grape | cytosol | 95.83 | 5.68 |
| VIT_08s0040g03200.t01 | Wine grape | cytosol | 95.83 | 5.67 |
| VIT_00s0208g00020.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_02s0087g00870.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_13s0067g03350.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_15s0045g00110.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.1370.10 | MapMan:35.2 | ProteinID:CCB49767 | ProteinID:CCB49767.1 | UniProt:F6HC64 | EMBL:FN595514 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR023574 | InterPro:Ribosomal_L4_dom_sf | SUPFAM:SSF52166 | UniParc:UPI000210A103 |
| ArrayExpress:VIT_13s0067g03340 | EnsemblPlantsGene:VIT_13s0067g03340 | EnsemblPlants:VIT_13s0067g03340.t01 | : | : | : |
Description
No Description!
Coordinates
chr13:+:1837357..1837462
Molecular Weight (calculated)
2961.8 Da
IEP (calculated)
12.079
GRAVY (calculated)
-0.596
Length
24 amino acids
Sequence
(BLAST)
(BLAST)
1: MCRGGRMFAP TKIWRCWHRK INVN
001: MVASAAARPL VTVQGLDGDM STDQSTTVTL PDVMTAPVRP DIVNFVHAQI SNNSRQPYAV SKKAGHQTSA ESWGTGRAVS RIPRVPGGGT HRAGQAAFGN
101: MCRGGRMFAP TKIWRRWHRR VNVNMKRHAI VSAIAATAVP ALVMARGHKI ENVPEMPLVV SDSAEAVEKT SAAIKVLKQI GAYDDAEKAK NSIGIRPGKG
201: KMRNRRYISR KGPLVVFGTE GAKIVKAFRN LPGVELCHVE RLNLLKLAPG GHLGRFVIWT KSAFEKLESI YGSFEKPSEK KKGYVLPRAK MVNADLARII
301: NSDEVQSVVN PIKDGSKRAV LKKNPLKNLN VMFKLNPYAK TAKRMSLLAE ASRVKAKKEK LEKKRKVVTK EAQAIKAAGK AWYQTMISDS DYTEFDNFTK
401: WLGASQ
101: MCRGGRMFAP TKIWRRWHRR VNVNMKRHAI VSAIAATAVP ALVMARGHKI ENVPEMPLVV SDSAEAVEKT SAAIKVLKQI GAYDDAEKAK NSIGIRPGKG
201: KMRNRRYISR KGPLVVFGTE GAKIVKAFRN LPGVELCHVE RLNLLKLAPG GHLGRFVIWT KSAFEKLESI YGSFEKPSEK KKGYVLPRAK MVNADLARII
301: NSDEVQSVVN PIKDGSKRAV LKKNPLKNLN VMFKLNPYAK TAKRMSLLAE ASRVKAKKEK LEKKRKVVTK EAQAIKAAGK AWYQTMISDS DYTEFDNFTK
401: WLGASQ
Arabidopsis Description
RPL4D60S ribosomal protein L4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49691]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.