Factsheet for VIT_06s0004g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g03200.t01	Wine grape	cytosol	96.54	96.31
VIT_13s0067g03340.t01	Wine grape	cytosol, mitochondrion	5.68	95.83
KRH32387	Soybean	nucleus	89.14	89.14
KRH19796	Soybean	nucleus	88.89	88.89
KRG95915	Soybean	endoplasmic reticulum	85.19	80.23
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	78.27	79.85
VIT_13s0067g03350.t01	Wine grape	cytosol	55.06	67.78
VIT_15s0045g00110.t01	Wine grape	cytosol	34.32	63.47
KRG96019	Soybean	endoplasmic reticulum, extracellular	13.09	58.89
VIT_02s0087g00870.t01	Wine grape	cytosol	13.58	44.72
VIT_00s0208g00020.t01	Wine grape	cytosol	33.09	34.54

Protein Annotations

EntrezGene:100251826	wikigene:100251826	MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	ProteinID:CCB43812	ProteinID:CCB43812.1
ncoils:Coil	UniProt:F6GUN5	EMBL:FN594951	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023574
EntrezGene:LOC100251826	wikigene:LOC100251826	PFAM:PF00573	PFAM:PF14374	ScanProsite:PS00939	PANTHER:PTHR19431
PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166
TIGR:TC60992	TIGR:TC64981	UniParc:UPI00015C7FF2	ArrayExpress:VIT_06s0004g00360	EnsemblPlantsGene:VIT_06s0004g00360	EnsemblPlants:VIT_06s0004g00360.t01
unigene:Vvi.1107	RefSeq:XP_002285741	RefSeq:XP_002285741.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:490414..492859

Molecular Weight (calculated)

44566.4 Da

IEP (calculated)

11.113

GRAVY (calculated)

-0.427

Length

405 amino acids

Sequence
(BLAST)

001: MAAAARPLVT VQVLKSDMAT DGGNAVPLPD VMKASIRPDI VNFVHSNISK NSRQPYAVSR RAGHQTSAES WGTGRAVSRI PRVPGGGTHR AGQGAFGNMC
101: RGGRMFAPTK IWRRWHRKIN VNQKRYAVVS AIAASAVPSL VMARGHRIES VPELPLVIGD SAESVEKTSA AIDILKQVGA YPDAEKAKDS HGIRPGKGKM
201: RNRRYISRKG PLIVYGTEGA KLVKAFRNIP GVEVANVERL NLLKLAPGGH LGRFIIWTKS AIEKVDSIYG SFDKTSEKKK GYLLPRAKMV NADLARIINS
301: DEVQSVVRPI KKEVKRAPMK KNPLKNLNTM LKLNPYAKTA RRMALLAEAQ RVKAKKEKLD KKRAQIPKEE AAAIKAAGKA WYQTMISDSD YTEFDNFSKW
401: LGVSQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.