Factsheet for VIT_08s0040g03200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00360.t01	Wine grape	cytosol	96.31	96.54
VIT_13s0067g03340.t01	Wine grape	cytosol, mitochondrion	5.67	95.83
KRH19796	Soybean	nucleus	88.42	88.64
KRH32387	Soybean	nucleus	88.42	88.64
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	78.33	80.1
KRG95915	Soybean	endoplasmic reticulum	84.24	79.53
VIT_15s0045g00110.t01	Wine grape	cytosol	35.71	66.21
VIT_13s0067g03350.t01	Wine grape	cytosol	52.96	65.35
KRG96019	Soybean	endoplasmic reticulum, extracellular	13.3	60.0
VIT_02s0087g00870.t01	Wine grape	cytosol	13.3	43.9
VIT_00s0208g00020.t01	Wine grape	cytosol	34.48	36.08

Protein Annotations

EntrezGene:100255110	wikigene:100255110	MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	ProteinID:CCB57001	ProteinID:CCB57001.1
UniProt:F6HQV3	EMBL:FN596008	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023574	EntrezGene:LOC100255110
wikigene:LOC100255110	PFAM:PF00573	PFAM:PF14374	ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1
InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	TIGR:TC63286
UniParc:UPI00015CA550	ArrayExpress:VIT_08s0040g03200	EnsemblPlantsGene:VIT_08s0040g03200	EnsemblPlants:VIT_08s0040g03200.t01	unigene:Vvi.11237	RefSeq:XP_002274975
RefSeq:XP_002274975.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:14139778..14141968

Molecular Weight (calculated)

44773.6 Da

IEP (calculated)

11.100

GRAVY (calculated)

-0.427

Length

406 amino acids

Sequence
(BLAST)

001: MAAAAARPLV TVQVLKSDMA TDGGNAVPLP DVMKASIRPD IVTFVHSNIS KNSRQPYAVS RRAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQGAFGNM
101: CRGGRMFAPT KIWRRWHRKI NVNQKRYAVV SAIAASAIPS LVMARGHRIE SVPELPLVIG DSAESVEKTS AAIDILKQVG AYPDAEKAKD SHAIRPGKGK
201: MRNRRYISRK GPLIVYGTEG AKLVKAFRNI PGVEVANVDR LNLLKLAPGG HLGRFVIWTK SAFEKLDSIY GSFEKTSEKK NGYLLPRSKM VNADLARIIN
301: SDEVQSVVRP IKKEVKRAPM KKNPLKNLNT MLKLNPYAKT ARRMALLAEA QRVKAKQEKL DKKRKQIPKE EVAAIKAAGK AWYQTMISDS DYTEFDNFSK
401: WLGVSQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.