Factsheet for Solyc09g007250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g118840.2.1
Solyc03g121460.1.1
Solyc05g008840.1.1
Solyc06g007110.2.1
Solyc06g072990.1.1
Solyc06g074190.2.1
Solyc09g082970.2.1
Solyc11g068720.1.1
Solyc12g040390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	Solyc03g118840.2.1	AT1G17970.1	21798944
AT3G09630.1	Solyc05g008840.1.1	AT1G17970.1	21798944
AT3G09630.1	Solyc12g040390.1.1	AT1G17970.1	21798944
AT3G09630.1	Solyc03g121460.1.1	AT3G13720.1	21798944
AT3G09630.1	Solyc09g082970.2.1	AT3G22960.1	21798944
AT5G02870.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT5G02870.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT5G02870.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT5G02870.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT5G02870.1	Solyc06g074190.2.1	AT5G22310.1	21798944
AT5G02870.1	Solyc11g068720.1.1	AT5G22310.1	21798944
AT5G02870.1	Solyc06g007110.2.1	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071725	Potato	cytosol	98.28	98.28
Solyc10g084350.1.1	Tomato	nucleus	46.31	91.26
Solyc10g086010.1.1	Tomato	extracellular	92.12	85.98
KRH32387	Soybean	nucleus	82.76	82.96
KRH19796	Soybean	nucleus	82.76	82.96
GSMUA_Achr4P21120_001	Banana	cytosol	82.51	82.51
GSMUA_Achr5P03060_001	Banana	cytosol	81.28	81.28
GSMUA_Achr7P01370_001	Banana	cytosol	12.32	79.37
AT3G09630.1	Thale cress	cytosol	79.31	79.31
Bra009560.1-P	Field mustard	cytosol	78.57	78.57
CDX70339	Canola	cytosol	78.33	78.33
Bra005749.1-P	Field mustard	cytosol	78.08	78.08
CDY41301	Canola	cytosol	75.12	78.01
CDY22192	Canola	cytosol	75.12	78.01
AT5G02870.1	Thale cress	cytosol	78.08	77.89
CDY10418	Canola	cytosol	78.08	77.89
CDX80842	Canola	cytosol	77.83	77.83
CDY11231	Canola	cytosol	75.12	77.81
GSMUA_Achr4P28490_001	Banana	nucleus	12.07	77.78
CDY44721	Canola	cytosol, extracellular	77.34	77.34
CDY41596	Canola	cytosol	77.09	77.09
CDX73989	Canola	cytosol	77.09	77.09
Bra001302.1-P	Field mustard	cytosol	76.85	76.85
Bra029780.1-P	Field mustard	cytosol	76.6	76.6
GSMUA_Achr4P28500_001	Banana	cytosol	20.94	75.89
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	73.89	75.57
KRG95915	Soybean	endoplasmic reticulum	79.56	75.12
Bra034075.1-P	Field mustard	cytosol	70.94	74.04
Zm00001d013076_P001	Maize	plasma membrane	71.92	72.28
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	71.67	72.03
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	71.67	72.03
TraesCS1D01G264200.1	Wheat	cytosol	71.43	71.78
Os07t0180900-01	Rice	nucleus, plasma membrane	71.43	71.6
TraesCS5A01G439100.2	Wheat	cytosol, unclear	71.18	71.53
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	71.18	71.53
TraesCS5D01G446300.2	Wheat	cytosol	70.94	71.29
KXG34535	Sorghum	cytosol	70.69	71.04
Os03t0796501-00	Rice	nucleus	70.69	71.04
EER90739	Sorghum	cytosol, plastid	70.69	71.04
Zm00001d007824_P001	Maize	plasma membrane	69.95	70.3
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	69.95	70.3
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	70.2	69.85
Zm00001d018957_P001	Maize	plasma membrane	69.21	69.73
TraesCS2A01G253600.1	Wheat	cytosol	67.0	67.49
HORVU4Hr1G075710.1	Barley	mitochondrion	70.2	67.22
KRG96019	Soybean	endoplasmic reticulum, extracellular	14.04	63.33
VIT_15s0045g00110.t01	Wine grape	cytosol	32.02	59.36
Bra006658.1-P	Field mustard	plastid	13.3	54.55
GSMUA_Achr2P12650_001	Banana	plastid	52.46	53.12
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	75.62	39.41
VIT_00s0208g00020.t01	Wine grape	cytosol	30.79	32.22

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	ncoils:Coil	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023574
UniProt:K4CQB5	PFAM:PF00573	PFAM:PF14374	ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1
InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	EnsemblPlantsGene:Solyc09g007250.2
EnsemblPlants:Solyc09g007250.2.1	UniParc:UPI000276B710	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:848610..851238

Molecular Weight (calculated)

44814.5 Da

IEP (calculated)

10.922

GRAVY (calculated)

-0.425

Length

406 amino acids

Sequence
(BLAST)

001: MATAAAIPTT TVQSLENDMA TDSAAVPLPA VMKAPIRPDV VTYVHSNISK NARQPYAVSR KAGHQTSAES WGTGRAVSRI PRVPGGGTHR AGQGAFGNMC
101: RGGRMFAPTQ TWRRWHRKIP VNQKRYAVAS AIAASSVPSL VLARGHRIES VPELPLVVSD SIEGIEKTSV AIKALKQIGA YPDAEKAKDS HAIRPGKGKM
201: RNRRYISRKG PLIVYGTEGA KLVKAFRNIP GVEICHVDRL NLLKLAPGGH LGRFIIWTKC AYEKLDAIYG TFDKPSLEKK GYLLPRPKMV NADLARIINS
301: DEVQSVVRPI KKDVNKRATL KKNPLKNLNV LLKLNPYAKT ARRMSLLAEA QRVKAKKEKL DKKRHQITKE EASAIKGASH SWYKTMISDS DYAEFDNFTK
401: WLGVSQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.