Factsheet for HORVU5Hr1G105870.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G028520.1
HORVU1Hr1G082970.1
HORVU2Hr1G050140.1
HORVU2Hr1G069400.8
HORVU3Hr1G018940.2
HORVU3Hr1G030600.8
HORVU3Hr1G064370.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	HORVU1Hr1G082970.1	AT1G17970.1	21798944
AT3G09630.1	HORVU3Hr1G064370.1	AT1G17970.1	21798944
AT3G09630.1	HORVU1Hr1G028520.1	AT3G13720.1	21798944
AT3G09630.1	HORVU3Hr1G018940.2	AT3G13720.1	21798944
AT3G09630.1	HORVU2Hr1G050140.1	AT3G22960.1	21798944
AT5G02870.1	HORVU2Hr1G069400.8	AT5G22310.1	21798944
AT5G02870.1	HORVU3Hr1G030600.8	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	97.06	98.02
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	96.81	97.77
TraesCS1D01G264200.1	Wheat	cytosol	96.81	97.77
TraesCS5A01G439100.2	Wheat	cytosol, unclear	96.57	97.52
TraesCS5D01G446300.2	Wheat	cytosol	96.32	97.28
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	95.83	96.78
HORVU4Hr1G075710.1	Barley	mitochondrion	98.04	94.34
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	84.56	85.4
Os03t0796501-00	Rice	nucleus	84.31	85.15
Zm00001d013076_P001	Maize	plasma membrane	84.07	84.9
EER90739	Sorghum	cytosol, plastid	83.58	84.41
GSMUA_Achr5P03060_001	Banana	cytosol	74.75	75.12
GSMUA_Achr4P21120_001	Banana	cytosol	74.02	74.38
CDY44721	Canola	cytosol, extracellular	72.79	73.15
Bra009560.1-P	Field mustard	cytosol	72.79	73.15
AT3G09630.1	Thale cress	cytosol	72.79	73.15
CDX70339	Canola	cytosol	72.55	72.91
AT5G02870.1	Thale cress	cytosol	72.55	72.73
CDY10418	Canola	cytosol	72.55	72.73
CDY41596	Canola	cytosol	72.3	72.66
CDX80842	Canola	cytosol	72.06	72.41
GSMUA_Achr4P28500_001	Banana	cytosol	19.85	72.32
CDY41301	Canola	cytosol	69.12	72.12
CDY22192	Canola	cytosol	69.12	72.12
Bra005749.1-P	Field mustard	cytosol	71.57	71.92
Bra029780.1-P	Field mustard	cytosol	71.57	71.92
CDX73989	Canola	cytosol	71.32	71.67
Bra001302.1-P	Field mustard	cytosol	71.08	71.43
CDY11231	Canola	cytosol	68.38	71.17
PGSC0003DMT400028707	Potato	cytosol	67.65	70.59
Solyc09g007250.2.1	Tomato	nucleus	69.85	70.2
PGSC0003DMT400071725	Potato	cytosol	69.61	69.95
PGSC0003DMT400045381	Potato	cytosol	69.12	69.29
Bra034075.1-P	Field mustard	cytosol	64.71	67.87
Solyc10g084350.1.1	Tomato	nucleus	34.07	67.48
GSMUA_Achr7P01370_001	Banana	cytosol	10.29	66.67
GSMUA_Achr4P28490_001	Banana	nucleus	10.29	66.67
Solyc10g086010.1.1	Tomato	extracellular	69.12	64.83
GSMUA_Achr2P12650_001	Banana	plastid	48.77	49.63
Bra006658.1-P	Field mustard	plastid	9.8	40.4
VIT_02s0087g00870.t01	Wine grape	cytosol	11.03	36.59
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	69.61	36.46
KRG89783	Soybean	plastid	3.68	15.62

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	UniProt:A0A287SLM8	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU5Hr1G105870
EnsemblPlants:HORVU5Hr1G105870.1	InterPro:IPR023574	PFAM:PF00573	PFAM:PF14374	ScanProsite:PS00939	PANTHER:PTHR19431
PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166
UniParc:UPI000B472688	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:622808285..622810943

Molecular Weight (calculated)

44523.1 Da

IEP (calculated)

11.317

GRAVY (calculated)

-0.336

Length

408 amino acids

Sequence
(BLAST)

001: ASAPMATTAR PLVSVKALDG DMATDAAGVP MPHVMTAPIR PDVITFVHRL LSCNSRQPYA VSRKAGHQTS AESWGTGRAV SRIPRVGGGG THRAGQGAFG
101: NMCRGGRMFA PTRIWRKWHR RVNIRLRRVA VASALAATAV PAIVTARGHR IEGVPEFPLV VSDSAEGIEK TSQAIKVLKQ MGAFADAEKA KDSVGIRPGK
201: GKMRNRRYIN RKGPLIVYGT EGSKIVKAFR NLPGVDVANV ERLNLLDLAP GGHLGRFVIW TESAFKKLDE VYGSFEASSS KKKGFVLPRP KMTNADLGRL
301: INSDEVQSVV KPINKEVKRR EARKNPLKNA AAVLKLNPYF GTARRMAVLA EAARVKARKD KINSKRTKLS AEEATKIKAA GKAWYQTMIS DSDYTEFDVF
401: SKWLGVSQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.