Factsheet for Bra005749.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002404.1-P
Bra006620.1-P
Bra006747.1-P
Bra017974.1-P
Bra020357.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02870.1	Bra017974.1-P	AT3G49580.1	21798944
AT5G02870.1	Bra002404.1-P	AT5G22310.1	21798944
AT5G02870.1	Bra006620.1-P	AT5G22310.1	21798944
AT5G02870.1	Bra006747.1-P	AT5G58720.1	21798944
AT5G02870.1	Bra020357.1-P	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11231	Canola	cytosol	95.81	99.23
CDX80842	Canola	cytosol	98.77	98.77
Bra009560.1-P	Field mustard	cytosol	98.52	98.52
AT5G02870.1	Thale cress	cytosol	93.84	93.61
Bra029780.1-P	Field mustard	cytosol	93.1	93.1
Bra034075.1-P	Field mustard	cytosol	87.44	91.26
Bra001302.1-P	Field mustard	cytosol	90.89	90.89
KRH19796	Soybean	nucleus	82.76	82.96
KRH32387	Soybean	nucleus	81.53	81.73
Solyc10g084350.1.1	Tomato	nucleus	40.64	80.1
PGSC0003DMT400028707	Potato	cytosol	76.6	79.54
GSMUA_Achr4P21120_001	Banana	cytosol	78.82	78.82
PGSC0003DMT400045381	Potato	cytosol	78.82	78.62
GSMUA_Achr4P28500_001	Banana	cytosol	21.67	78.57
GSMUA_Achr5P03060_001	Banana	cytosol	78.33	78.33
Solyc09g007250.2.1	Tomato	nucleus	78.08	78.08
PGSC0003DMT400071725	Potato	cytosol	77.83	77.83
Solyc10g086010.1.1	Tomato	extracellular	78.82	73.56
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	71.92	73.55
KRG95915	Soybean	endoplasmic reticulum	77.34	73.02
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	72.41	72.77
Zm00001d007824_P001	Maize	plasma membrane	72.17	72.52
TraesCS1D01G264200.1	Wheat	cytosol	72.17	72.52
EER90739	Sorghum	cytosol, plastid	71.92	72.28
TraesCS5A01G439100.2	Wheat	cytosol, unclear	71.92	72.28
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	71.92	72.28
Zm00001d013076_P001	Maize	plasma membrane	71.67	72.03
TraesCS5D01G446300.2	Wheat	cytosol	71.67	72.03
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	71.92	71.57
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	71.18	71.53
KXG34535	Sorghum	cytosol	71.18	71.53
GSMUA_Achr7P01370_001	Banana	cytosol	11.08	71.43
GSMUA_Achr4P28490_001	Banana	nucleus	11.08	71.43
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	70.69	71.04
Zm00001d018957_P001	Maize	plasma membrane	70.44	70.97
Os07t0180900-01	Rice	nucleus, plasma membrane	70.69	70.86
Os03t0796501-00	Rice	nucleus	68.97	69.31
TraesCS2A01G253600.1	Wheat	cytosol	68.47	68.98
HORVU4Hr1G075710.1	Barley	mitochondrion	71.18	68.16
KRG96019	Soybean	endoplasmic reticulum, extracellular	12.56	56.67
Bra006658.1-P	Field mustard	plastid	13.79	56.57
VIT_15s0045g00110.t01	Wine grape	cytosol	30.05	55.71
GSMUA_Achr2P12650_001	Banana	plastid	51.48	52.12
VIT_00s0208g00020.t01	Wine grape	cytosol	29.56	30.93

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	EnsemblPlantsGene:Bra005749	EnsemblPlants:Bra005749.1	EnsemblPlants:Bra005749.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574	UniProt:M4CNG1	PFAM:PF00573	PFAM:PF14374
ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS
InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI000253FB19	SEG:seg	:	:

Description

AT3G09630 (E=2e-209) | 60S ribosomal protein L4/L1 (RPL4A)

Coordinates

chrA03:-:425104..426523

Molecular Weight (calculated)

44783.7 Da

IEP (calculated)

10.905

GRAVY (calculated)

-0.371

Length

406 amino acids

Sequence
(BLAST)

001: MAAAAVRPLV TVQGLDGDMT TDQSTTVCLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPS LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKD SIGIRSGVGK
201: MRNRRYICRK GPLVVYGTEG AKIVKAFRNI TGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEMK KGYVLPRAKM VNADLARIIN
301: SDEVQSVVKP IKKDAKRAVM KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKSKKEKL EKKRKSVTKE QSQAIKAAGK AWYQTMISDS DYTEFDNFTK
401: WLGASQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.