Factsheet for Solyc10g084350.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g118840.2.1
Solyc03g121460.1.1
Solyc05g008840.1.1
Solyc06g007110.2.1
Solyc06g072990.1.1
Solyc06g074190.2.1
Solyc09g082970.2.1
Solyc11g068720.1.1
Solyc12g040390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	Solyc03g118840.2.1	AT1G17970.1	21798944
AT3G09630.1	Solyc05g008840.1.1	AT1G17970.1	21798944
AT3G09630.1	Solyc12g040390.1.1	AT1G17970.1	21798944
AT3G09630.1	Solyc03g121460.1.1	AT3G13720.1	21798944
AT3G09630.1	Solyc09g082970.2.1	AT3G22960.1	21798944
AT5G02870.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT5G02870.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT5G02870.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT5G02870.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT5G02870.1	Solyc06g074190.2.1	AT5G22310.1	21798944
AT5G02870.1	Solyc11g068720.1.1	AT5G22310.1	21798944
AT5G02870.1	Solyc06g007110.2.1	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P28490_001	Banana	nucleus	23.79	77.78
GSMUA_Achr7P01370_001	Banana	cytosol	23.3	76.19
PGSC0003DMT400028707	Potato	cytosol	99.51	52.43
Bra006658.1-P	Field mustard	plastid	24.27	50.51
Solyc09g007250.2.1	Tomato	nucleus	91.26	46.31
Solyc10g086010.1.1	Tomato	extracellular	93.2	44.14
CDY41301	Canola	cytosol	82.52	43.48
CDY22192	Canola	cytosol	82.52	43.48
Bra034075.1-P	Field mustard	cytosol	81.55	43.19
KRH32387	Soybean	nucleus	83.98	42.72
GSMUA_Achr4P21120_001	Banana	cytosol	83.98	42.61
AT3G09630.1	Thale cress	cytosol	83.5	42.36
CDY11231	Canola	cytosol	80.1	42.09
CDY44721	Canola	cytosol, extracellular	82.52	41.87
CDY41596	Canola	cytosol	82.52	41.87
Bra029780.1-P	Field mustard	cytosol	82.04	41.63
KRH19796	Soybean	nucleus	81.55	41.48
Bra009560.1-P	Field mustard	cytosol	81.55	41.38
CDX70339	Canola	cytosol	81.07	41.13
GSMUA_Achr5P03060_001	Banana	cytosol	81.07	41.13
CDY10418	Canola	cytosol	81.07	41.03
AT5G02870.1	Thale cress	cytosol	81.07	41.03
CDX73989	Canola	cytosol	80.58	40.89
Bra001302.1-P	Field mustard	cytosol	80.58	40.89
CDX80842	Canola	cytosol	80.1	40.64
Bra005749.1-P	Field mustard	cytosol	80.1	40.64
KRG95915	Soybean	endoplasmic reticulum	80.1	38.37
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	71.84	37.28
VIT_15s0045g00110.t01	Wine grape	cytosol	39.32	36.99
Zm00001d007824_P001	Maize	plasma membrane	71.36	36.39
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	71.36	36.39
KXG34535	Sorghum	cytosol	70.87	36.14
Zm00001d013076_P001	Maize	plasma membrane	70.87	36.14
EER90739	Sorghum	cytosol, plastid	70.39	35.89
Zm00001d018957_P001	Maize	plasma membrane	69.42	35.48
Os07t0180900-01	Rice	nucleus, plasma membrane	69.42	35.31
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	68.45	34.9
TraesCS1D01G264200.1	Wheat	cytosol	68.45	34.9
TraesCS5A01G439100.2	Wheat	cytosol, unclear	68.45	34.9
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	68.45	34.9
TraesCS5D01G446300.2	Wheat	cytosol	67.96	34.65
Os03t0796501-00	Rice	nucleus	66.99	34.16
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	66.99	34.16
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	67.48	34.07
TraesCS2A01G253600.1	Wheat	cytosol	65.05	33.25
HORVU4Hr1G075710.1	Barley	mitochondrion	67.96	33.02
GSMUA_Achr2P12650_001	Banana	plastid	45.63	23.44
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	79.13	20.92
VIT_00s0208g00020.t01	Wine grape	cytosol	38.84	20.62
KRG96019	Soybean	endoplasmic reticulum, extracellular	3.4	7.78
GSMUA_Achr4P28500_001	Banana	cytosol	1.46	2.68

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	ncoils:Coil	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023574
UniProt:K4D3M1	PFAM:PF00573	PFAM:PF14374	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom
InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	EnsemblPlantsGene:Solyc10g084350.1	EnsemblPlants:Solyc10g084350.1.1	UniParc:UPI000276A268
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:63936674..63938301

Molecular Weight (calculated)

23598.0 Da

IEP (calculated)

10.951

GRAVY (calculated)

-0.617

Length

206 amino acids

Sequence
(BLAST)

001: MRNRRYISRK GPLIVYGTEG AKLVKAFRNL PGVEICHVDR LNLLKLAPGG HLGRFIVWTK SAYEKLDEIY GTFDKPSQKK RGYLLPRPKM ANADLARIIN
101: SDEVQSVVRP IKKDAKRATL KKNPLKNLNV LLKLNPYAKT ARRMSLLAEA QRVKAKKEKL DKKRHQITKE EASAIRSAGK GWFKTMISDS DYTEFENFTK
201: WLGVTQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.