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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra005749.1-P Field mustard cytosol 98.77 98.77
CDY11231 Canola cytosol 95.07 98.47
CDX70339 Canola cytosol 97.54 97.54
CDY10418 Canola cytosol 96.8 96.56
CDY22192 Canola cytosol 92.86 96.42
CDY41301 Canola cytosol 92.86 96.42
CDY41596 Canola cytosol 94.33 94.33
CDY44721 Canola cytosol, extracellular 94.33 94.33
AT5G02870.1 Thale cress cytosol 94.09 93.86
CDX73989 Canola cytosol 91.38 91.38
KRH19796 Soybean nucleus 83.25 83.46
KRH32387 Soybean nucleus 82.02 82.22
Solyc10g084350.1.1 Tomato nucleus 40.64 80.1
PGSC0003DMT400028707 Potato cytosol 76.11 79.03
GSMUA_Achr4P21120_001 Banana cytosol 78.57 78.57
PGSC0003DMT400045381 Potato cytosol 78.57 78.38
GSMUA_Achr5P03060_001 Banana cytosol 78.08 78.08
Solyc09g007250.2.1 Tomato nucleus 77.83 77.83
GSMUA_Achr4P28500_001 Banana cytosol 21.43 77.68
PGSC0003DMT400071725 Potato cytosol 77.59 77.59
KRH67633 Soybean endoplasmic reticulum, mitochondrion 72.41 74.06
KRG95915 Soybean endoplasmic reticulum 77.83 73.49
Solyc10g086010.1.1 Tomato extracellular 78.57 73.33
TraesCS1D01G264200.1 Wheat cytosol 72.91 73.27
TraesCS1B01G274700.2 Wheat cytosol, nucleus 72.91 73.27
TraesCS5B01G442100.1 Wheat cytosol, golgi, nucleus, unclear 72.66 73.02
TraesCS5A01G439100.2 Wheat cytosol, unclear 72.66 73.02
TraesCS5D01G446300.2 Wheat cytosol 72.41 72.77
EER90739 Sorghum cytosol, plastid 72.17 72.52
Zm00001d007824_P001 Maize plasma membrane 71.92 72.28
Zm00001d013076_P001 Maize plasma membrane 71.92 72.28
HORVU5Hr1G105870.1 Barley cytosol, plasma membrane 72.41 72.06
Zm00001d034440_P001 Maize mitochondrion, plasma membrane 71.43 71.78
KXG34535 Sorghum cytosol 71.43 71.78
TraesCS1A01G354400.1 Wheat cytosol, extracellular, golgi, unclear 71.18 71.53
GSMUA_Achr4P28490_001 Banana nucleus 11.08 71.43
GSMUA_Achr7P01370_001 Banana cytosol 11.08 71.43
Zm00001d018957_P001 Maize plasma membrane 70.2 70.72
Os07t0180900-01 Rice nucleus, plasma membrane 70.44 70.62
Os03t0796501-00 Rice nucleus 69.21 69.55
TraesCS2A01G253600.1 Wheat cytosol 68.72 69.23
HORVU4Hr1G075710.1 Barley mitochondrion 71.67 68.63
KRG96019 Soybean endoplasmic reticulum, extracellular 12.56 56.67
VIT_15s0045g00110.t01 Wine grape cytosol 30.05 55.71
GSMUA_Achr2P12650_001 Banana plastid 50.99 51.62
CDY07934 Canola cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid 90.39 47.11
VIT_00s0208g00020.t01 Wine grape cytosol 29.56 30.93
Protein Annotations
MapMan:17.1.2.1.2Gene3D:3.40.1370.10GO:A0A078CVS3EnsemblPlants:CDX80842ProteinID:CDX80842ProteinID:CDX80842.1
ncoils:CoilGO:GO:0003674GO:GO:0003735GO:GO:0005198GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00134237001InterPro:IPR023574PFAM:PF00573
PFAM:PF14374ScanProsite:PS00939PANTHER:PTHR19431PANTHER:PTHR19431:SF1InterPro:Ribos_L4_C_domInterPro:Ribosomal_L4/L1e
InterPro:Ribosomal_L4/L1e_euk/arc_CSInterPro:Ribosomal_L4_dom_sfSUPFAM:SSF52166UniParc:UPI0004EB4738SEG:seg:
Description
BnaC03g00960D
Coordinates
chrLK031823:+:451943..453552
Molecular Weight (calculated)
44736.6 Da
IEP (calculated)
10.941
GRAVY (calculated)
-0.386
Length
406 amino acids
Sequence
(BLAST)
001: MAAAAARPLV TVQGLDGDMT TDQSTTVCLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTN AAIKVLKQIG AYDDAEKAKD SIGIRSGVGK
201: MRNRRYISRK GPLVVYGTEG AKIVKAFRNI TGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEMK KGYVLPRAKM VNADLARIIN
301: SDEVQSVVKP IKKDAKRAVM KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKSKKEKL EKKRKSVSKE QSQAIKAAGK AWYQTMISDS DYTEFDNFTK
401: WLGASQ
Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)
001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ
Arabidopsis Description
RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.