CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83878
CDX92969
CDX94878
CDX96741
CDY35484
CDY37482
CDY40829
CDY51733
CDY51734
CDY55133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	CDX83878	AT1G17970.1	21798944
AT3G09630.1	CDX96741	AT1G17970.1	21798944
AT3G09630.1	CDY37482	AT3G13720.1	21798944
AT3G09630.1	CDY51733	AT3G13720.1	21798944
AT3G09630.1	CDY51734	AT3G13720.1	21798944
AT3G09630.1	CDY55133	AT3G13720.1	21798944
AT3G09630.1	CDX92969	AT3G22960.1	21798944
AT3G09630.1	CDX94878	AT3G22960.1	21798944
AT3G09630.1	CDY35484	AT3G22960.1	21798944
AT3G09630.1	CDY40829	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44721	Canola	cytosol, extracellular	99.51	99.51
CDY22192	Canola	cytosol	92.12	95.65
CDY41301	Canola	cytosol	91.87	95.4
AT3G09630.1	Thale cress	cytosol	94.58	94.58
CDX70339	Canola	cytosol	94.33	94.33
CDX80842	Canola	cytosol	94.33	94.33
CDY11231	Canola	cytosol	90.64	93.88
CDY10418	Canola	cytosol	94.09	93.86
CDX73989	Canola	cytosol	93.84	93.84
Solyc10g084350.1.1	Tomato	nucleus	41.87	82.52
KRH19796	Soybean	nucleus	81.28	81.48
KRH32387	Soybean	nucleus	80.79	80.99
PGSC0003DMT400028707	Potato	cytosol	76.6	79.54
PGSC0003DMT400045381	Potato	cytosol	78.82	78.62
GSMUA_Achr4P21120_001	Banana	cytosol	78.08	78.08
GSMUA_Achr5P03060_001	Banana	cytosol	77.83	77.83
PGSC0003DMT400071725	Potato	cytosol	77.34	77.34
Solyc09g007250.2.1	Tomato	nucleus	77.09	77.09
GSMUA_Achr7P01370_001	Banana	cytosol	11.58	74.6
GSMUA_Achr4P28490_001	Banana	nucleus	11.58	74.6
GSMUA_Achr4P28500_001	Banana	cytosol	20.44	74.11
TraesCS1D01G264200.1	Wheat	cytosol	73.4	73.76
Solyc10g086010.1.1	Tomato	extracellular	78.82	73.56
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	73.15	73.51
TraesCS5A01G439100.2	Wheat	cytosol, unclear	73.15	73.51
Zm00001d007824_P001	Maize	plasma membrane	73.15	73.51
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	73.15	73.51
TraesCS5D01G446300.2	Wheat	cytosol	72.91	73.27
KXG34535	Sorghum	cytosol	72.41	72.77
EER90739	Sorghum	cytosol, plastid	72.41	72.77
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	72.66	72.3
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	70.69	72.29
Zm00001d013076_P001	Maize	plasma membrane	71.92	72.28
Zm00001d018957_P001	Maize	plasma membrane	71.67	72.21
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	71.43	71.78
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	71.43	71.78
KRG95915	Soybean	endoplasmic reticulum	75.86	71.63
Os07t0180900-01	Rice	nucleus, plasma membrane	71.43	71.6
Os03t0796501-00	Rice	nucleus	69.7	70.05
TraesCS2A01G253600.1	Wheat	cytosol	69.21	69.73
HORVU4Hr1G075710.1	Barley	mitochondrion	72.17	69.1
KRG96019	Soybean	endoplasmic reticulum, extracellular	12.32	55.56
VIT_15s0045g00110.t01	Wine grape	cytosol	29.06	53.88
GSMUA_Achr2P12650_001	Banana	plastid	50.25	50.87
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	92.61	48.27
VIT_00s0208g00020.t01	Wine grape	cytosol	28.57	29.9

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	GO:A0A078HV61	UniProt:A0A078HV61	EnsemblPlants:CDY41596	ProteinID:CDY41596
ProteinID:CDY41596.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00073243001	InterPro:IPR023574
PFAM:PF00573	PFAM:PF14374	ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom
InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI0004EF3A94	SEG:seg

Description

BnaC05g43330DBnaC05g43330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HV61]

Coordinates

chrLK032501:-:152044..153893

Molecular Weight (calculated)

44587.6 Da

IEP (calculated)

10.971

GRAVY (calculated)

-0.349

Length

406 amino acids

Sequence
(BLAST)

001: MATSAARPLV TIQGLGGDMT TDQSSTIVLP DVMTAPVRPD IVSFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRKWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTA AAIKVLKQIG AYDDAEKAKD SIGIRSGVGK
201: MRNRRYICRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVVWTK SAFEKLEGIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEVQSVVKP IKKDAKRAVM KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL TKKRKTVTKE ESLAIKAAGK AWYQTMISDS DYTEFDNFTK
401: WLGASQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.