CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plasma membrane, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68309
CDX72810
CDX74569
CDX76571
CDX77757
CDX79572
CDX84289
CDX84635
CDX89402
CDX89404
CDX89880
CDX90471
CDX94426
CDX94429
CDX97786
CDY01715
CDY01716
CDY02094
CDY04750
CDY08228
CDY09624
CDY12499
CDY15467
CDY17034
CDY17310
CDY19906
CDY21408
CDY23021
CDY23649
CDY23978
CDY24050
CDY25762
CDY26125
CDY27921
CDY29635
CDY33064
CDY36691
CDY37482
CDY44801
CDY47592
CDY49480
CDY51388
CDY51733
CDY51734
CDY52126
CDY55133
CDY64684
CDY66007
CDY67628
CDY67905
CDY70668
CDY72088

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13720.1	CDX89880	AT1G03600.1	21798944
AT3G13720.1	CDY15467	AT1G03600.1	21798944
AT3G13720.1	CDY51388	AT1G03600.1	21798944
AT3G13720.1	CDY70668	AT1G03600.1	21798944
AT3G13720.1	CDY72088	AT1G03600.1	21798944
AT3G13720.1	CDY04750	AT1G22990.1	21798944
AT3G13720.1	CDY12499	AT1G22990.1	21798944
AT3G13720.1	CDY21408	AT1G22990.1	21798944
AT3G13720.1	CDY25762	AT1G22990.1	21798944
AT3G13720.1	CDY17034	AT1G47260.1	21798944
AT3G13720.1	CDY23649	AT1G47260.1	21798944
AT3G13720.1	CDY47592	AT1G47260.1	21798944
AT3G13720.1	CDY67628	AT1G47260.1	21798944
AT3G13720.1	CDY08228	AT1G55190.1	21798944
AT3G13720.1	CDY24050	AT1G55190.1	21798944
AT3G13720.1	CDY26125	AT1G55190.1	21798944
AT3G13720.1	CDY33064	AT1G55190.1	21798944
AT3G13720.1	CDX68309	AT1G71480.1	21798944
AT3G13720.1	CDX72810	AT1G71480.1	21798944
AT3G13720.1	CDY36691	AT1G71480.1	21798944
AT3G13720.1	CDX97786	AT2G30880.1	21798944
AT3G13720.1	CDY23978	AT2G30880.1	21798944
AT3G13720.1	CDY29635	AT2G30880.1	21798944
AT3G13720.1	CDX79572	AT2G34690.1	18845362
AT3G13720.1	CDX84289	AT2G34690.1	18845362
AT3G13720.1	CDX84635	AT2G34690.1	18845362
AT3G13720.1	CDY37482	AT3G13720.1	21798944
AT3G13720.1	CDY51733	AT3G13720.1	21798944
AT3G13720.1	CDY51734	AT3G13720.1	21798944
AT3G13720.1	CDY55133	AT3G13720.1	21798944
AT3G13720.1	CDY02094	AT3G50110.1	21798944
AT3G13720.1	CDY23021	AT3G50110.1	21798944
AT3G13720.1	CDX76571	AT4G17486.1	21798944
AT3G13720.1	CDX90471	AT4G17486.1	21798944
AT3G13720.1	CDY09624	AT4G17486.1	21798944
AT3G13720.1	CDY27921	AT4G17486.1	21798944
AT3G13720.1	CDX89402	AT4G25660.1	21798944
AT3G13720.1	CDX89404	AT4G25660.1	21798944
AT3G13720.1	CDX94426	AT4G25660.1	21798944
AT3G13720.1	CDX94429	AT4G25660.1	21798944
AT3G13720.1	CDY49480	AT4G25660.1	21798944
AT3G13720.1	CDY66007	AT4G25660.1	21798944
AT3G13720.1	CDX89402	AT4G25680.1	21798944
AT3G13720.1	CDX89404	AT4G25680.1	21798944
AT3G13720.1	CDX94426	AT4G25680.1	21798944
AT3G13720.1	CDX94429	AT4G25680.1	21798944
AT3G13720.1	CDY49480	AT4G25680.1	21798944
AT3G13720.1	CDY66007	AT4G25680.1	21798944
AT3G13720.1	CDY44801	AT5G09450.1	21798944
AT3G13720.1	CDX74569	AT5G37680.1	21798944
AT3G13720.1	CDY01715	AT5G37680.1	21798944
AT3G13720.1	CDY01716	AT5G37680.1	21798944
AT3G13720.1	CDX77757	AT5G47310.1	21798944
AT3G13720.1	CDY64684	AT5G47310.1	21798944
AT3G13720.1	CDY17310	AT5G55200.1	21798944
AT3G13720.1	CDY19906	AT5G55200.1	21798944
AT3G13720.1	CDY52126	AT5G58750.1	21798944
AT3G13720.1	CDY67905	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51734	Canola	plastid	92.82	92.82
CDY55133	Canola	plasma membrane	63.16	61.97
CDY51733	Canola	plastid	61.72	60.28
AT3G13720.1	Thale cress	cytosol, plasma membrane, plastid	47.85	53.19
CDY23634	Canola	plasma membrane	43.06	49.72
CDX97509	Canola	plasma membrane	41.63	48.07
CDY37483	Canola	plasma membrane	40.67	46.7
CDY51735	Canola	plasma membrane	39.71	45.6
Solyc03g121460.1.1	Tomato	plastid	39.23	45.05
PGSC0003DMT400006409	Potato	plasma membrane	38.28	43.96
KRH23330	Soybean	plastid	35.41	40.22
KRH10001	Soybean	mitochondrion	35.41	40.22
GSMUA_Achr7P09070_001	Banana	plastid	35.89	39.89
VIT_09s0002g02400.t01	Wine grape	plastid	36.36	39.38
CDY08228	Canola	plasma membrane	35.41	39.15
CDY33064	Canola	cytosol, plasma membrane, plastid	34.93	39.04
CDY24050	Canola	cytosol, plasma membrane, plastid	34.45	38.5
CDY26125	Canola	cytosol, plasma membrane, plastid	33.97	37.57
KRH47141	Soybean	plasma membrane	31.1	36.52
Zm00001d039455_P002	Maize	extracellular, mitochondrion	32.06	34.72
KRH44167	Soybean	plasma membrane	29.19	34.66
TraesCS3A01G104300.1	Wheat	plastid	31.1	34.03
TraesCS3D01G106500.1	Wheat	plastid	30.62	33.68
TraesCS3B01G122600.1	Wheat	plastid	30.62	33.68
EES00126	Sorghum	plastid	30.62	33.33
Os05t0200280-01	Rice	plasma membrane	27.75	30.05
Os01t0196500-01	Rice	plastid	28.23	29.35
TraesCS1A01G124100.1	Wheat	plastid	26.79	29.32
TraesCS1D01G130300.1	Wheat	plastid	26.79	29.32
CDX81845	Canola	plasma membrane	25.36	29.28
TraesCS1B01G143000.1	Wheat	plastid	26.79	29.17
CDY26225	Canola	plasma membrane	25.36	28.8
CDY59501	Canola	plasma membrane	25.36	28.8
CDX95035	Canola	plastid	27.27	27.4
CDY05662	Canola	plastid	9.57	27.4
CDX93539	Canola	plastid	26.79	26.92
CDY06788	Canola	plastid	24.88	26.8
CDY25186	Canola	plastid	11.0	26.74
CDY41253	Canola	plastid	11.0	26.74
CDX70153	Canola	plastid	27.27	26.51
CDY61529	Canola	plastid	15.79	26.19
HORVU1Hr1G028520.1	Barley	plastid	26.79	25.93
HORVU3Hr1G018940.2	Barley	plastid	31.58	25.88
CDY43514	Canola	mitochondrion	21.53	25.71
CDY32804	Canola	plastid	22.49	25.0
CDX86646	Canola	plasma membrane	21.05	24.72
CDY15494	Canola	plasma membrane	21.05	24.72
CDX72173	Canola	plastid	22.97	23.65
CDY27245	Canola	plastid	22.97	23.65
CDX74794	Canola	plastid	23.92	23.47
CDY18870	Canola	plastid	23.45	23.45
Zm00001d037747_P001	Maize	plastid	21.05	23.4
CDX80758	Canola	plastid	23.92	23.36
CDY51077	Canola	cytosol, endoplasmic reticulum, plasma membrane	20.57	23.24
OQU77594	Sorghum	plastid	21.53	22.96
CDX67633	Canola	plastid	22.97	22.75
CDY50022	Canola	cytosol, endoplasmic reticulum, plasma membrane	20.1	22.58
CDY63156	Canola	plastid	23.45	22.48
CDY58876	Canola	plastid	23.45	22.48
CDY17405	Canola	plastid	20.57	22.4
CDY31997	Canola	plastid	22.49	22.38
CDY07736	Canola	plastid	23.45	22.07
CDX81033	Canola	plastid	22.49	21.56
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	17.22	19.78

Protein Annotations

EnsemblPlants:CDY37482	EnsemblPlantsGene:GSBRNA2T00064078001	GO:A0A078HI04	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF2	PFAM:PF03208	ProteinID:CDY37482	ProteinID:CDY37482.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EBE681	UniProt:A0A078HI04	MapMan:22.8.4.3.2	:

Description

BnaC01g37500DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI04]

Coordinates

chrLK032401:-:161117..162055

Molecular Weight (calculated)

23771.3 Da

IEP (calculated)

7.094

GRAVY (calculated)

0.583

Length

209 amino acids

Sequence
(BLAST)

001: MTNYGAIPTS SHASPSPPVV DVESLSSDNQ RTKAARAMPR RPWGVMLDVH AIGLPCSVSD ASSRIKTNCN YFLMNYSIFL SIIYLIVIYS GLIKHPVSLI
101: AFTVLVSIYI FFFNLQYHEP VELFHYQING WTFLIVKICL IFLAVLLLLW TKETYSFRWP LLIGCVVILI HTVVRKTEDL FLDEEAAGTT ETYWNWGLIL
201: ALFLQICLG

Best Arabidopsis Sequence Match ( AT3G13720.1 )
(BLAST)

001: MTNYGAIPTS SHASPLVDVE SLSRAKHRIK AGLATRRAWR VMFDFHSMGL PHGVSDAFTR IKTNLAYFRM NYAIVVLIVI FFSLIWHPTS LIVFTVLVVV
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST

Arabidopsis Description

PRA1F3PRA1 family protein F3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIC6]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.