CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67589
CDX68620
CDX73507
CDX78209
CDX80758
CDY07161
CDY08228
CDY24050
CDY26125
CDY30172
CDY33064
CDY43553
CDY46728
CDY48492
CDY51584

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30880.1	CDY08228	AT1G55190.1	21798944
AT2G30880.1	CDY24050	AT1G55190.1	21798944
AT2G30880.1	CDY26125	AT1G55190.1	21798944
AT2G30880.1	CDY33064	AT1G55190.1	21798944
AT2G30880.1	CDX67589	AT3G54120.1	21798944
AT2G30880.1	CDX73507	AT3G54120.1	21798944
AT2G30880.1	CDX78209	AT3G54120.1	21798944
AT2G30880.1	CDY51584	AT3G54120.1	21798944
AT2G30880.1	CDY07161	AT4G00980.1	21798944
AT2G30880.1	CDY48492	AT4G00980.1	21798944
AT2G30880.1	CDX68620	AT4G30080.1	21798944
AT2G30880.1	CDY30172	AT4G30080.1	21798944
AT2G30880.1	CDY43553	AT4G30080.1	21798944
AT2G30880.1	CDY46728	AT4G30080.1	21798944
AT2G30880.1	CDX80758	AT5G01640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021674.1-P	Field mustard	cytosol	99.6	99.6
CDX97786	Canola	cytosol, plastid	98.01	98.4
CDX84814	Canola	cytosol	34.59	88.78
AT2G30880.1	Thale cress	cytosol, plastid	88.27	88.1
VIT_12s0028g00830.t01	Wine grape	cytosol	71.17	71.6
KRH73621	Soybean	endoplasmic reticulum	69.38	71.22
KRH14510	Soybean	cytosol	68.99	70.82
CDY23978	Canola	cytosol	63.82	68.88
CDX84813	Canola	mitochondrion	13.92	68.63
Solyc05g021100.2.1	Tomato	cytosol, nucleus, plastid	58.25	66.74
GSMUA_Achr5P02150_001	Banana	cytosol, plastid	63.22	63.86
KXG37877	Sorghum	cytosol	62.03	62.4
Os03t0666200-01	Rice	plasma membrane	62.03	62.4
TraesCS4A01G294800.1	Wheat	cytosol, plastid	61.23	61.6
TraesCS4D01G017000.2	Wheat	cytosol, plastid	61.03	61.4
Zm00001d013589_P006	Maize	cytosol, plastid	60.24	60.6
HORVU4Hr1G002870.1	Barley	cytosol	51.89	59.32
GSMUA_Achr9P10020_001	Banana	cytosol	57.85	58.79
TraesCS4B01G018800.2	Wheat	cytosol, plastid	61.03	57.17
Zm00001d007849_P002	Maize	cytosol, plastid	53.68	57.08
Zm00001d018772_P001	Maize	peroxisome	10.93	56.7
Os07t0138100-01	Rice	cytosol	54.47	56.61
TraesCS2D01G255300.2	Wheat	cytosol	54.27	56.17
TraesCS2A01G254800.2	Wheat	cytosol	54.08	55.97
TraesCS2B01G267300.1	Wheat	cytosol	52.88	55.77
Zm00001d034954_P001	Maize	extracellular	61.63	54.1
Os12t0505950-00	Rice	cytosol	8.55	53.75
Os05t0128700-00	Rice	cytosol	8.55	53.75
KXG34371	Sorghum	mitochondrion	53.88	53.45
HORVU2Hr1G060900.13	Barley	plastid	50.5	51.63
Os05t0153901-00	Rice	cytosol	7.95	50.0
Zm00001d033157_P001	Maize	mitochondrion	4.97	15.92

Protein Annotations

Gene3D:2.30.29.30	MapMan:27.4.3.3	UniProt:A0A078GT49	EnsemblPlants:CDY29635	ProteinID:CDY29635	ProteinID:CDY29635.1
ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00043388001	InterPro:IPR001849	InterPro:IPR011993	PFAM:PF00169	InterPro:PH-like_dom_sf
InterPro:PH_domain	PFscan:PS50003	PANTHER:PTHR24356	PANTHER:PTHR24356:SF306	SMART:SM00233	SUPFAM:SSF50729
UniParc:UPI0004EF20D0	SEG:seg	:	:	:	:

Description

BnaA04g17920DBnaA04g17920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GT49]

Coordinates

chrLK032241:+:20548..23517

Molecular Weight (calculated)

55682.6 Da

IEP (calculated)

5.060

GRAVY (calculated)

-0.613

Length

503 amino acids

Sequence
(BLAST)

001: MASNGASPRP VDATDNSLER IKRQLATGSG RNLLQGPLYK RSETLRKWNE RWVILDPTTG KMEYKTRRNE PAIKGTILFD DNSTITVSPV NFQGLPKYNG
101: CCIYISTPQK KDYFLCAETP GAARAWVTTL HATQLVLKAH KEAVDSLSGS GSSTLGTVAT VVAAANSTAL ECSKEIQAAM QVSLRNALKI TANKPIDGPL
201: DDLTIMKETL RVKDEELQNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVELERLS KDSERQQEAA ISKLKELEEK TSTLSREKDQ
301: LVKERDSALK EAHLWRSELG KARERVVILE GAVVRAEEKA RVAEANGEAK AKEASQRETA AWAEKQELLA YVNMLQTQLQ RQQLETEQVF EEKTESTNGE
401: TSLPMTKETE KDVDKACLSV SKTASMPGEN VVRMSEDQVV NAHAQAPVGE NEWNDIQATE ARVSDVREIS AETERDSLDI TVVTPESDVP RNDLPPESFH
501: HQP

Best Arabidopsis Sequence Match ( AT2G30880.1 )
(BLAST)

001: MASNGASPRI VDATENSLDK IKRQLASGSG RNLLQGPLFK RSETLRKWNE RWVILDPTTG KMEYKTRRNE PTIKGTILFD ENSTISISPV NFQGLPKYNG
101: CCIYIGTPQK KDYFLCAETP GAAKAWVTTL HATQLVLKAH KEAVESLSGS GSATLGTVAT VVAAANSTAL ECSREIQAAM QISLRNALKI TPNKPIDGPL
201: DDLTIMKETL RVKDEELHNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVEFERLT TDSQRQQEAT KLKLKELEEK TFTLSKEKDQ
301: LVKERDAALQ EAHMWRSELG KARERVVILE GAVVRAEEKV RVAEASGEAK SKEASQREAT AWTEKQELLA YVNMLQTQLQ RQQLETKQVC EEKTESTNGE
401: ASLPMTKETE KNVDKACLSI SRTASIPGEN VVHMSEEQVV NAQPPVGENE WNDIQATEAR VSDVREISAE TERDRRNSLD IPVVSPEPNV PRNDPPSESF
501: HHQP

Arabidopsis Description

At2g30880/F7F1.9 [Source:UniProtKB/TrEMBL;Acc:Q8VYJ6]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.