CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91907
KRG93818
KRG97195
KRH00333
KRH10001
KRH23330
KRH32827
KRH34867
KRH44167
KRH47141
KRH49465
KRH65569
KRH66004
KRH68921
KRH75801
KRH76033

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30880.1	KRH10001	AT1G55190.1	21798944
AT2G30880.1	KRH23330	AT1G55190.1	21798944
AT2G30880.1	KRH44167	AT1G55190.1	21798944
AT2G30880.1	KRH47141	AT1G55190.1	21798944
AT2G30880.1	KRH66004	AT3G54120.1	21798944
AT2G30880.1	KRH75801	AT3G54120.1	21798944
AT2G30880.1	KRG97195	AT4G00980.1	21798944
AT2G30880.1	KRH68921	AT4G00980.1	21798944
AT2G30880.1	KRG91907	AT4G30080.1	21798944
AT2G30880.1	KRH34867	AT4G30080.1	21798944
AT2G30880.1	KRG93818	AT5G01640.1	21798944
AT2G30880.1	KRH00333	AT5G01640.1	21798944
AT2G30880.1	KRH32827	AT5G01640.1	21798944
AT2G30880.1	KRH49465	AT5G01640.1	21798944
AT2G30880.1	KRH65569	AT5G01640.1	21798944
AT2G30880.1	KRH76033	AT5G01640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14510	Soybean	cytosol	99.18	99.18
VIT_12s0028g00830.t01	Wine grape	cytosol	83.67	82.0
Solyc05g021100.2.1	Tomato	cytosol, nucleus, plastid	67.55	75.4
AT2G30880.1	Thale cress	cytosol, plastid	71.43	69.44
Bra021674.1-P	Field mustard	cytosol	71.22	69.38
CDY29635	Canola	cytosol, plastid	71.22	69.38
CDX97786	Canola	cytosol, plastid	70.61	69.06
GSMUA_Achr5P02150_001	Banana	cytosol, plastid	68.57	67.47
KXG37877	Sorghum	cytosol	66.53	65.2
HORVU4Hr1G002870.1	Barley	cytosol	58.37	65.0
Os03t0666200-01	Rice	plasma membrane	66.33	65.0
TraesCS4D01G017000.2	Wheat	cytosol, plastid	66.33	65.0
TraesCS4A01G294800.1	Wheat	cytosol, plastid	66.12	64.8
GSMUA_Achr9P10020_001	Banana	cytosol	65.1	64.44
Zm00001d013589_P006	Maize	cytosol, plastid	65.71	64.4
Bra022817.1-P	Field mustard	cytosol	35.31	62.01
Os07t0138100-01	Rice	cytosol	60.2	60.95
TraesCS2A01G254800.2	Wheat	cytosol	60.2	60.7
TraesCS2D01G255300.2	Wheat	cytosol	60.2	60.7
Zm00001d007849_P002	Maize	cytosol, plastid	58.57	60.68
TraesCS4B01G018800.2	Wheat	cytosol, plastid	66.33	60.52
TraesCS2B01G267300.1	Wheat	cytosol	58.57	60.17
KXG34371	Sorghum	mitochondrion	59.18	57.2
Zm00001d034954_P001	Maize	extracellular	66.33	56.72
Zm00001d018772_P001	Maize	peroxisome	11.02	55.67
HORVU2Hr1G060900.13	Barley	plastid	55.31	55.08
Os12t0505950-00	Rice	cytosol	8.57	52.5
Os05t0128700-00	Rice	cytosol	8.57	52.5
CDY23978	Canola	cytosol	49.18	51.72
Os05t0153901-00	Rice	cytosol	7.96	48.75
Zm00001d033157_P001	Maize	mitochondrion	6.53	20.38

Protein Annotations

EntrezGene:100820315	Gene3D:2.30.29.30	MapMan:27.4.3.3	EMBL:ACUP02001285	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G284400
GO:GO:0003674	GO:GO:0003824	GO:GO:0004674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	GO:GO:0035556	UniProt:I1JJ22
InterPro:IPR001849	InterPro:IPR011993	EnsemblPlants:KRH73621	ProteinID:KRH73621	ProteinID:KRH73621.1	InterPro:PH-like_dom_sf
InterPro:PH_domain	PFscan:PS50003	PANTHER:PTHR24356	PANTHER:PTHR24356:SF215	SMART:SM00233	SUPFAM:SSF50729
UniParc:UPI0002337251	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:46591973..46596047

Molecular Weight (calculated)

54441.1 Da

IEP (calculated)

5.564

GRAVY (calculated)

-0.590

Length

490 amino acids

Sequence
(BLAST)

001: MASPRAAENT ENSLEKIKRQ LASASGRNLL QGPLLKRSET LRKWNERWVI LDPTTGRMEY KIRRNEPSVK GTIIFDANST ITISPVNFHG LPKYDGCCFY
101: IGTPQKKDYF LCAETPGAAR AWVSTLHATQ LVLKAHKEAV NSLSGNGSTK LGTVATVVAA ANSTALECSK EIEAAMQISL RNALGMMNNR TTDGPMDDLT
201: IMKETLRVKD EELQNLSRDL RARDSTIKDI ADKLSETAEA AEAAASAAYT MDEHRRIACA EIERLNKDSE KQQELFTQKL KESEEKIGGL SKEREQLIRQ
301: RDAAIQEANM WRSELAKARE HDVILEAAVV RAEEKVRVAE ANAETRIREA VQRESAALKE KEELLAYVNV LKAQLQRQHI DTTQVFEKTE SCSDTKHVDP
401: TEENVDKACL SVSRAIPVPA ENVVHMATDQ VNIQPVGDNE WSDIQATEAR IADVREVAPE TDGSSLDIPV VNQPGTNHHH EQGANSFHQP

Best Arabidopsis Sequence Match ( AT2G30880.1 )
(BLAST)

001: MASNGASPRI VDATENSLDK IKRQLASGSG RNLLQGPLFK RSETLRKWNE RWVILDPTTG KMEYKTRRNE PTIKGTILFD ENSTISISPV NFQGLPKYNG
101: CCIYIGTPQK KDYFLCAETP GAAKAWVTTL HATQLVLKAH KEAVESLSGS GSATLGTVAT VVAAANSTAL ECSREIQAAM QISLRNALKI TPNKPIDGPL
201: DDLTIMKETL RVKDEELHNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVEFERLT TDSQRQQEAT KLKLKELEEK TFTLSKEKDQ
301: LVKERDAALQ EAHMWRSELG KARERVVILE GAVVRAEEKV RVAEASGEAK SKEASQREAT AWTEKQELLA YVNMLQTQLQ RQQLETKQVC EEKTESTNGE
401: ASLPMTKETE KNVDKACLSI SRTASIPGEN VVHMSEEQVV NAQPPVGENE WNDIQATEAR VSDVREISAE TERDRRNSLD IPVVSPEPNV PRNDPPSESF
501: HHQP

Arabidopsis Description

At2g30880/F7F1.9 [Source:UniProtKB/TrEMBL;Acc:Q8VYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.