Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G294800.1 | Wheat | cytosol, plastid | 99.4 | 99.4 |
| HORVU4Hr1G002870.1 | Barley | cytosol | 85.6 | 97.27 |
| TraesCS4B01G018800.2 | Wheat | cytosol, plastid | 99.4 | 92.55 |
| KXG37877 | Sorghum | cytosol | 90.6 | 90.6 |
| Os03t0666200-01 | Rice | plasma membrane | 90.4 | 90.4 |
| Zm00001d013589_P006 | Maize | cytosol, plastid | 89.6 | 89.6 |
| Zm00001d034954_P001 | Maize | extracellular | 89.8 | 78.36 |
| Os12t0505950-00 | Rice | cytosol | 12.0 | 75.0 |
| Os05t0128700-00 | Rice | cytosol | 12.0 | 75.0 |
| GSMUA_Achr5P02150_001 | Banana | cytosol, plastid | 71.6 | 71.89 |
| Os05t0153901-00 | Rice | cytosol | 11.4 | 71.25 |
| VIT_12s0028g00830.t01 | Wine grape | cytosol | 69.6 | 69.6 |
| GSMUA_Achr9P10020_001 | Banana | cytosol | 67.6 | 68.28 |
| KRH73621 | Soybean | endoplasmic reticulum | 65.0 | 66.33 |
| KRH14510 | Soybean | cytosol | 64.4 | 65.71 |
| TraesCS2D01G255300.2 | Wheat | cytosol | 62.8 | 64.61 |
| CDX97786 | Canola | cytosol, plastid | 61.6 | 61.48 |
| CDY29635 | Canola | cytosol, plastid | 61.4 | 61.03 |
| Bra021674.1-P | Field mustard | cytosol | 61.4 | 61.03 |
| Solyc05g021100.2.1 | Tomato | cytosol, nucleus, plastid | 53.4 | 60.82 |
| AT2G30880.1 | Thale cress | cytosol, plastid | 61.2 | 60.71 |
| Bra022817.1-P | Field mustard | cytosol | 28.8 | 51.61 |
| CDY23978 | Canola | cytosol | 41.2 | 44.21 |
| Zm00001d033157_P001 | Maize | mitochondrion | 8.0 | 25.48 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G017000.2 | EnsemblPlantsGene:TraesCS4D01G017000 | Gene3D:2.30.29.30 | InterPro:IPR001849 | InterPro:IPR011993 | InterPro:PH-like_dom_sf |
| InterPro:PH_domain | ncoils:Coil | PANTHER:PTHR24356 | PANTHER:PTHR24356:SF215 | PFAM:PF00169 | PFscan:PS50003 |
| SEG:seg | SMART:SM00233 | SUPFAM:SSF50729 | TIGR:cd00821 | MapMan:27.4.3.3 | : |
Description
No Description!
Coordinates
chr4D:-:7649447..7653455
Molecular Weight (calculated)
54541.3 Da
IEP (calculated)
4.869
GRAVY (calculated)
-0.474
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTNGSSPRV RDTESSLEKV KRQLSTGSGR YLLQGPLLKR SETLRKWNER WIILDPTSGK MEYKLRRNET AVKGTIIFDA SSTITLSPVN FQGMPKYDGC
101: CFYIGTPQKK DYFLCAETPG AAKAWVSTLH ATQLVLQAHK EAVNSLAGNG SPSTLGTVAT AVANANATAL EAMKEIDAAL KVSMRAALGL GTNNSNVGQL
201: DDLTIMKETL RVKDEELQHL AKDIRARDAT IQEIAEKLTE TAEAAEAAAS AAHTIDEQRR LLCSEIERLK KAMETQMEQS MLKLRQSEEK VISLSKENDQ
301: LLKERDAAFQ EAYMWRTELG KAREQAVIQE AAIARAEEKV RVSEADAAVR IKEAAEKLHA AEKEKEELLA LIGVLQSQVQ REQSSTKQVC EERSESCSGA
401: DNSPPLTKHV DASDDDVDKA CVSDSRSVLV SSESTEVQLA VDGVDIRPIG DPEWGGFQQP EALIADVREV SPEAEGSSLD IPVVNPAPAN DHMQGGATHP
101: CFYIGTPQKK DYFLCAETPG AAKAWVSTLH ATQLVLQAHK EAVNSLAGNG SPSTLGTVAT AVANANATAL EAMKEIDAAL KVSMRAALGL GTNNSNVGQL
201: DDLTIMKETL RVKDEELQHL AKDIRARDAT IQEIAEKLTE TAEAAEAAAS AAHTIDEQRR LLCSEIERLK KAMETQMEQS MLKLRQSEEK VISLSKENDQ
301: LLKERDAAFQ EAYMWRTELG KAREQAVIQE AAIARAEEKV RVSEADAAVR IKEAAEKLHA AEKEKEELLA LIGVLQSQVQ REQSSTKQVC EERSESCSGA
401: DNSPPLTKHV DASDDDVDKA CVSDSRSVLV SSESTEVQLA VDGVDIRPIG DPEWGGFQQP EALIADVREV SPEAEGSSLD IPVVNPAPAN DHMQGGATHP
001: MASNGASPRI VDATENSLDK IKRQLASGSG RNLLQGPLFK RSETLRKWNE RWVILDPTTG KMEYKTRRNE PTIKGTILFD ENSTISISPV NFQGLPKYNG
101: CCIYIGTPQK KDYFLCAETP GAAKAWVTTL HATQLVLKAH KEAVESLSGS GSATLGTVAT VVAAANSTAL ECSREIQAAM QISLRNALKI TPNKPIDGPL
201: DDLTIMKETL RVKDEELHNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVEFERLT TDSQRQQEAT KLKLKELEEK TFTLSKEKDQ
301: LVKERDAALQ EAHMWRSELG KARERVVILE GAVVRAEEKV RVAEASGEAK SKEASQREAT AWTEKQELLA YVNMLQTQLQ RQQLETKQVC EEKTESTNGE
401: ASLPMTKETE KNVDKACLSI SRTASIPGEN VVHMSEEQVV NAQPPVGENE WNDIQATEAR VSDVREISAE TERDRRNSLD IPVVSPEPNV PRNDPPSESF
501: HHQP
101: CCIYIGTPQK KDYFLCAETP GAAKAWVTTL HATQLVLKAH KEAVESLSGS GSATLGTVAT VVAAANSTAL ECSREIQAAM QISLRNALKI TPNKPIDGPL
201: DDLTIMKETL RVKDEELHNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVEFERLT TDSQRQQEAT KLKLKELEEK TFTLSKEKDQ
301: LVKERDAALQ EAHMWRSELG KARERVVILE GAVVRAEEKV RVAEASGEAK SKEASQREAT AWTEKQELLA YVNMLQTQLQ RQQLETKQVC EEKTESTNGE
401: ASLPMTKETE KNVDKACLSI SRTASIPGEN VVHMSEEQVV NAQPPVGENE WNDIQATEAR VSDVREISAE TERDRRNSLD IPVVSPEPNV PRNDPPSESF
501: HHQP
Arabidopsis Description
At2g30880/F7F1.9 [Source:UniProtKB/TrEMBL;Acc:Q8VYJ6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.